PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007139
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 403aa    MW: 45418.1 Da    PI: 8.8681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007139genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-111660348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W+  Ed +l + +  lG+++W+ Ia+++  ++t  qc+ rw++yl
      DCAR_007139 16 SWSSKEDNILREQIGILGMDNWTHIASKFT-NKTTRQCRRRWFTYL 60
                     6****************************9.*************97 PP
2Myb_DNA-binding45.61.7e-1466109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W++eEd ll +a k +G++ W++Ia+ +  gRt++ +k+r+ +
      DCAR_007139  66 KGGWSPEEDNLLCQAQKIFGNR-WTRIAKVVS-GRTDNAVKNRFST 109
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.495960IPR017930Myb domain
SMARTSM007172.4E-101362IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-2514107IPR009057Homeodomain-like
PfamPF002491.3E-101660IPR001005SANT/Myb domain
CDDcd001675.71E-101660No hitNo description
Gene3DG3DSA:1.10.10.601.9E-181767IPR009057Homeodomain-like
PROSITE profilePS5129420.44861115IPR017930Myb domain
SMARTSM007174.5E-1565113IPR001005SANT/Myb domain
PfamPF002497.9E-1366109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2068114IPR009057Homeodomain-like
CDDcd001679.06E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MHRLAKNKKA TRHIVSWSSK EDNILREQIG ILGMDNWTHI ASKFTNKTTR QCRRRWFTYL  60
NSDYKKGGWS PEEDNLLCQA QKIFGNRWTR IAKVVSGRTD NAVKNRFSTL CKRRTKHEPS  120
AKETATRAKL EALAKENATT YVDLNNKRVV TQLDTNSNEL SETSVPSKKM RRGSSDVIER  180
QQEEFSEVNE QLTPSLAVIR RKVDILRNYC QQSWRASQLY VDSPGSSDYS IGSTLLTHIA  240
LVKPEHVASD FSLQNTGADI QPYKLGQSNV DCDVVKDAVT CETTNQSGEI SSKNIMLSFN  300
DLKANDGSFH DFSSNEFDFP LQATPLFRSL ASGVPSPQFT ESYDIKEERV MLCNVCVAWI  360
SQEREFLLKT LGVEAASPIP EHNSFATFNL QKGASSKPLI NT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-231711510108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227159.14e-86PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A166EAE90.0A0A166EAE9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41242134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-71MYB family protein