PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005818
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 362aa    MW: 39279.7 Da    PI: 8.7537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005818genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-124064327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 +++C++++rtGtCk+G +CkF+H++
  DCAR_005818 40 EPECQYYLRTGTCKFGTTCKFHHPR 64
                 799********************96 PP
2zf-CCCH37.83.3e-1285110227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G +CkF H++
  DCAR_005818  85 GEKECSYYLKTGQCKFGLTCKFDHPQ 110
                  7899********************97 PP
3zf-CCCH38.61.8e-12239265127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++++G Ck+G++Ck++H+p
  DCAR_005818 239 PGQPECKYYMKNGDCKFGSSCKYHHPP 265
                  5789*********************97 PP
4zf-CCCH31.33.5e-10286310226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +  +C+f++++ +Ck+G +CkF H+
  DCAR_005818 286 GVQPCSFYMQNKYCKFGHTCKFDHP 310
                  6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4743765IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-53764IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-94064IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-64165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-44364IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-583110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.05183111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-585110IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-985110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-489108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586238266IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7238265IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-10240265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6242266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4244264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169284312IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4284311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6286314IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-8286310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5288310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLPLPRNFSL FWNSSVPHYL SKVGGVVRTA GGEFPERIGE PECQYYLRTG TCKFGTTCKF  60
HHPRNGGGSL SNVPVNIYGY PFRPGEKECS YYLKTGQCKF GLTCKFDHPQ LPGISVPASV  120
RPYYPTVQSS PPPDQYGGAT TSYRVPRPPL LPGSYVSGAY GPLLLPQGVM PIPNWSPYSG  180
PVSPVMSPGA QPSVGAASLY GVTPLSSSAP AFAGPYAPLP SSAGQSSNSR MEHQFPERPG  240
QPECKYYMKN GDCKFGSSCK YHHPPDWANL KTSCVLSHIG LPLRPGVQPC SFYMQNKYCK  300
FGHTCKFDHP VGAIRYNTST SSLNDMAVAP YMLQSTLTTT IPFPELQPEF VSGSNLDPHL  360
T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236101.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-137C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A166D9Y60.0A0A166D9Y6_DAUCS; Uncharacterized protein
STRINGVIT_07s0104g01460.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-139C3H family protein