PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005039
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 301aa    MW: 33294.4 Da    PI: 8.0973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005039genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-18104153255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p +   r r++lg++ t+e Aa a+++a+ kl+g
  DCAR_005039 104 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETPEAAAYAYDRAAYKLRG 153
                  59******9.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.97E-21103163No hitNo description
Gene3DG3DSA:3.30.730.101.1E-30104162IPR001471AP2/ERF domain
SMARTSM003805.3E-36104167IPR001471AP2/ERF domain
PROSITE profilePS5103222.998104161IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22104161IPR016177DNA-binding domain
PfamPF008477.8E-13105153IPR001471AP2/ERF domain
PRINTSPR003672.3E-12105116IPR001471AP2/ERF domain
PRINTSPR003672.3E-12143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNRMQETSIP DSQLGNNNIG TSLSNIILAS NTNALDSIFS HCSSSMSPVV DQLGSSVYHT  60
QRDLLQKFCE ENTSQNQISV PDNFRSVQNS LYNPSYLVPP KKKLYRGVRQ RHWGKWVAEI  120
RLPQNRMRVW LGTYETPEAA AYAYDRAAYK LRGDYARLNF PNLSDPSKLG FGDGSRLNAL  180
KNAVDAKISA ICQKVRREKA KKKAKKNSEA CPDGNKIDTN EKLAKVDSNS SLSLAGNDSN  240
LSNDIVSSSV SEDGLWMDVN SPYSVLGACP LVPQELEFEG CSLARMPSFD PELIWEFLAG  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20103161160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20101161263ATERF1
3gcc_A1e-20101161263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234044.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W26e-62ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A166CQN70.0A0A166CQN7_DAUCS; Uncharacterized protein
STRINGXP_002509951.11e-101(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]