PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002800
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 390aa    MW: 42044.4 Da    PI: 8.1332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002800genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-105275427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                  +C ++++tG C yG++C+++H++
  DCAR_002800 52 QNCAYYMQTGSCGYGNKCRYNHPR 75
                 68********************96 PP
2zf-CCCH40.73.9e-13104130127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f++rtGtCkyG++C+F+H++
  DCAR_002800 104 FGEPECQFYLRTGTCKYGATCNFHHPR 130
                  5789*********************96 PP
3zf-CCCH352.3e-11152176327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C ++++tG+CkyG +Ck++H++
  DCAR_002800 152 EIECAYYMKTGHCKYGITCKYHHPQ 176
                  568********************97 PP
4zf-CCCH33.47.6e-11307331226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++ +C++++++G C++G +Ck++H+
  DCAR_002800 307 GETECQYYMKNGDCRFGLSCKYHHP 331
                  7789********************8 PP
5zf-CCCH314.2e-10354377326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     C+f++++G+Ck+G +CkF H+
  DCAR_002800 354 VQACNFYMQNGHCKFGHTCKFDHP 377
                  568********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8594876IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-44875IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65176IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-85175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197103131IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6103130IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5109130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141149177IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5149176IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5153176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986305333IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5305332IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8307331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5308333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.516351379IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5351378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6353378IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-8353377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4356376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MELYGHGAGA NGSSGDRVAE WPTAGQETGL EESMMRLGLF GGEFYPERGG VQNCAYYMQT  60
GSCGYGNKCR YNHPRDRSLW PNTSNVVMVG GTVRTTGGEF PERFGEPECQ FYLRTGTCKY  120
GATCNFHHPR NGGGSLSNAP VNIYGYPLRP GEIECAYYMK TGHCKYGITC KYHHPQMPGL  180
SVAAPARPSY ATVQSSVPPP EQYGGATTNY GVPRPPLLPG SYVPGGYGPL LLPQGVMPVP  240
NWSPYSGPVS PAMSPGVQPS VRAASLYGMT PLSSSAPAFG GPYAPLPSSA GPSTTSQMEH  300
LFPQRPGETE CQYYMKNGDC RFGLSCKYHH PADWMASKKN CVLSHLGLPL RQGVQACNFY  360
MQNGHCKFGH TCKFDHPVAA SDTIHQLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233143.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-150C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A166HEB00.0A0A166HEB0_DAUCS; Uncharacterized protein
STRINGXP_009776613.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein