PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045786m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 454aa    MW: 50177 Da    PI: 7.7344
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045786mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-09169209545
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  orange1.1g045786m 169 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 209
                        7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-7165228IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415167211IPR004827Basic-leucine zipper domain
CDDcd147086.92E-22169221No hitNo description
SuperFamilySSF579597.74E-7169212No hitNo description
PfamPF001709.5E-7169209IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7170213No hitNo description
PROSITE patternPS000360172187IPR004827Basic-leucine zipper domain
PfamPF141441.3E-33251326IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPSFDSQFSN SEKLVTFSCT EGTTIQSNRG SNLGAFEQSV GFRLGDAVNL TGNTVLNSTK  60
ASGQANTSDP LQIVTFDKSP TASNFNLSTI QVESHRLPFE KNHRSNLVSI SSGNTENWGE  120
SNMADASPRT DISTDADTDE KNQRFDRGQS TAVVASDSSD RSKDKLDQKT LRRLAQNREA  180
ARKSRLRKKA YVQQLESSRL KLTQLEQELQ RARQQGIFIS SSGDQAHSMS GNGAMAFDVE  240
YARWLEEQNK QINELRSAVN SHASDTELRM VVDGIMAHYD EIFRLKANAA KADVFHLLSG  300
MWKTPAERCF MWLGGFRSSE LLKLLVNQLE PLTEQQLVGI GNLQQSSQQA EDALSQGMEA  360
LQQSLAETLS SGSLGSSGSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR QQTLQQMHRI  420
LTTRQSARAL LAIHDYFSRL RALSSLWMAR PRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465757.10.0transcription factor TGA6-like isoform X1
RefseqXP_006465758.10.0transcription factor TGA6-like isoform X1
RefseqXP_024954407.10.0transcription factor TGA6-like isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLV4T2U10.0V4T2U1_9ROSI; Uncharacterized protein
STRINGXP_006465757.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-172TGACG motif-binding factor 6