PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g037591m

Common Name

CISIN_1g037591mg, LOC102616408

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 332aa MW: 37052.8 Da PI: 8.7666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037591m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.5e-55	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+ orange1.1g037591m 10 LPPGFRFHPSDEELITYYLVNKISDASFTG-RAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEI 100 79***********************999.89***********99999************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ orange1.1g037591m 101 FNSvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 137 9989999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-64	8	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.917	10	158	IPR003441	NAC domain
Pfam	PF02365	2.6E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEGDKKEETL PPGFRFHPSD EELITYYLVN KISDASFTGR AIADVDLNKC EPWDLPGKAK 60 MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSVTSELVG MKKTLVFYRG 120 RAPRGEKTNW VMHEYRIHSK SAFRTSKDEW VVCRVFQKSA GAKKFPTNQS RAVNPAYNLD 180 IGASVIPPQM IQAENFQFPV GRNYTGNADQ LAEFTRMFRG GASSSVNNNF PIQSQMNYPL 240 AGGFTISGLN LNLGGATTQP VLRPMPPPPP HPQAMHQEEV TCSMMTSSAY AADQSLTGYA 300 AEINQANGAA GGSRYMSLEH CMDLDSYWPP Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	9	164	19	174	NAC domain-containing protein 19
3swm_B	2e-56	9	164	19	174	NAC domain-containing protein 19
3swm_C	2e-56	9	164	19	174	NAC domain-containing protein 19
3swm_D	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_A	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_B	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_C	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_D	2e-56	9	164	19	174	NAC domain-containing protein 19
4dul_A	2e-56	9	164	16	171	NAC domain-containing protein 19
4dul_B	2e-56	9	164	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450119.1	0.0	protein CUP-SHAPED COTYLEDON 1
Refseq	XP_006483615.1	0.0	protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A067FUX4	0.0	A0A067FUX4_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NWK3	0.0	A0A2H5NWK3_CITUN; Uncharacterized protein
TrEMBL	V4WAJ8	0.0	V4WAJ8_9ROSI; Uncharacterized protein
STRING	XP_006483615.1	0.0	(Citrus sinensis)
STRING	XP_006450119.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-118	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	orange1.1g037591m
Entrez Gene	102616408