PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036551m
Common NameCISIN_1g036551mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 454aa    MW: 49105.8 Da    PI: 9.997
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036551mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.23.2e-22349411163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+ ++++e+++l +e+
  orange1.1g036551m 349 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRSEVTRIRNEYEQLLAEN 411
                        89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.7E-2973141IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.5E-51180313No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-18342407No hitNo description
SMARTSM003386.3E-22349413IPR004827Basic-leucine zipper domain
PfamPF001702.7E-20349411IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.288351414IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11352408No hitNo description
CDDcd147022.57E-23354404No hitNo description
PROSITE patternPS000360356371IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPRLRLFMRA TGRRRRRLMK TTTVVTPVWL GWCENLLETG DIESWEAVRQ RSKLKKRRQR  60
RHLLLLHRSR LPTTSTGAVN PDWSGFQAYS PMPPHGFLAS SPQAHPYMWG VQHIMPPYGT  120
PPHPYVAMYP HGGIYAHPSI PPGSYPFSPF AMPSPNGIVE ASGNTPGSME ADGKPSDAKE  180
KLPIKRSKGS LGSLNMITGK NNDLGKASGA SANGAYSKSA ESGSEGTSEG SDANSQNGSQ  240
LKSGGGHDSL EGETSQNGSS ANDPQNGGAS TPHAMVNQSM AIVPMSGPGA PVAVPGPTTN  300
LNIGMDYWGA SAANIPAMRG KVPSTPVAGG IVAGGSRDSV QSQLWLQDER ELKRQRRKQS  360
NRESARRSRL RKQAECDELA QRADALKEEN ASLRSEVTRI RNEYEQLLAE NASLKERLGE  420
IPVQEDERSV RNDQHLNNDT QQTGHSDLVQ SGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14860RQRSKLKKRRQRR
25560KRRQRR
3365371RRSRLRK
4365372RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.57660.0callus| flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432686.10.0bZIP transcription factor 16
RefseqXP_006471481.10.0bZIP transcription factor 16
RefseqXP_024039953.10.0bZIP transcription factor 16
RefseqXP_024039954.10.0bZIP transcription factor 16
RefseqXP_024952276.10.0bZIP transcription factor 16
RefseqXP_024952277.10.0bZIP transcription factor 16
SwissprotQ501B21e-167BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A067EPV70.0A0A067EPV7_CITSI; Uncharacterized protein
STRINGXP_006471481.10.0(Citrus sinensis)
STRINGXP_006432686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-154basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]