PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036039m
Common NameCISIN_1g036039mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 509aa    MW: 56523.3 Da    PI: 7.5247
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036039mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10205244443
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         k  rr+++NReAAr+sR+RKka++++Le+   +L +  +
  orange1.1g036039m 205 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQ 244
                        6889************************985444444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-9197253No hitNo description
SMARTSM003381.0E-5202266IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186204248IPR004827Basic-leucine zipper domain
PfamPF001701.7E-7205246IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-7206253No hitNo description
PROSITE patternPS000360209224IPR004827Basic-leucine zipper domain
PfamPF141441.0E-31286361IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MASHRIGAAG GLSHDSAGPS NLHHHHVPYA TSLHQGFINQ EGPAFDFGEL QEAIVLQGVK  60
FRNDEATKAP LFTAAAGGRP AATLEMFPSW PMRFQQTPRG SSKSGGESIS TDSGSALNTI  120
SSGKAEASQS QLEQPESPIS NINHIKPSAS NQQQSVEMAN DASRTGPSSS QQNQNHQSAA  180
ALTDAKPSQE KRKGPGSTSD RQLDAKTLRR LAQNREAARK SRLRKKAYVQ QLETSRIKLN  240
QLEQELQRAR SQVNFDPQLN LMNLSVPRAA IFDMEYARWL EDDQRHISEL RSGLNQHYSD  300
GDLRIIVDAY ISHYDEIFRL KGVAAKSDVF HLITGMWTTS AERCFLWMGG FRPSELIKML  360
ISQLDPLTEQ QVMGIYSLQQ STQQAEEALS QGLEQLQQSL IETIAGGPVV DGMQQMVVAL  420
GKLENLEGFV RQADNLRQQT LHQLRRILTV RQAARCFLVI GEYYGRLRAL SSLWASRPRE  480
TMISEDNSCQ TTTDLQMVQH SQNHFSNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.167648e-97callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487950.10.0transcription factor TGA9 isoform X2
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A067F4D00.0A0A067F4D0_CITSI; Uncharacterized protein
STRINGXP_006487948.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]