PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029519m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 193aa    MW: 20691.2 Da    PI: 4.617
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029519mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.62.3e-07163185325
                        XXCHHHCHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKk 25 
                        + +r+rr++kNRe+A rsR+RK+
  orange1.1g029519m 163 AQQRQRRMIKNRESAARSRERKQ 185
                        679*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-6158186No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTVDGILRNV YNTTTASTTD ATLLDAQITL VDTNSNLIAN ENDQNGAVSA GAMKSVDDVW  60
REIVSGEKKE MKEEAIDEMM TLEDFLAKAG AVEDSAGGDD MDVKAFANVT ERLSGGVYAF  120
DQPAAASPFQ VEGAIVGFGN GVEVVGGRGK RGRVMLEPLD KAAQQRQRRM IKNRESAARS  180
RERKQVTKLC SN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.106720.0fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473064.11e-133G-box-binding factor 4
SwissprotP427777e-37GBF4_ARATH; G-box-binding factor 4
TrEMBLV4T3H71e-137V4T3H7_9ROSI; Uncharacterized protein
STRINGXP_006473064.11e-132(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.18e-34bZIP family protein