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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026116m | ||||||||
Common Name | CISIN_1g023462mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 244aa MW: 26876.3 Da PI: 9.6659 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 23.4 | 1.2e-07 | 16 | 34 | 31 | 49 |
RWP-RK 31 vLKriCRqyGIkRWPhRki 49 ++ +iCR +G++RWP+Rk orange1.1g026116m 16 IISKICRDNGLDRWPYRKF 34 6779**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 9.955 | 1 | 56 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MISPNISLSL SPTPPIISKI CRDNGLDRWP YRKFLSGKSI EDIKKYAARE KSKELAELSK 60 IARKSGFQPL SNETSKLHGV TSPPNLQQQG SKNSPVGQPH VLLNANLTKG IMALDEFKHG 120 FPSDGLSTAS YKWWGGRSSD GNDGIHKDES EIDEEDKQAE AKADKESATQ ATGNEKSGNG 180 ETESNVDPQG SGLLTAARKR TVEEGREALK LGVYKKYCVK QLDRKERVLL HRIFKSSLPK 240 EWL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.6169 | 0.0 | callus| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX064679 | 0.0 | KX064679.1 Citrus trifoliata clone 2 RWP-RK domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437156.1 | 1e-160 | protein NLP3 | ||||
Refseq | XP_006484885.1 | 1e-160 | protein NLP3 | ||||
TrEMBL | A0A067FBY6 | 1e-178 | A0A067FBY6_CITSI; Uncharacterized protein | ||||
STRING | XP_006484885.1 | 1e-160 | (Citrus sinensis) | ||||
STRING | XP_006437156.1 | 1e-160 | (Citrus clementina) |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026116m |