PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025985m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 246aa    MW: 27191.7 Da    PI: 4.9103
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025985mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.48.5e-15163223362
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                        + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L k+++e+ k+ +++l  +
  orange1.1g025985m 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLlKEKAERTKERYKQLMEK 223
                        679**************************************97256788888888888665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-12159221No hitNo description
SMARTSM003385.3E-10161225IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841163215IPR004827Basic-leucine zipper domain
PfamPF001704.7E-13163222IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-9165216No hitNo description
CDDcd147071.07E-16165211No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTVDGILRNV YNTTTASTTD ATLLDAQITL VDTNSNLIAN ENDQNGAVSA GAMKSVDDVW  60
REIVSGEKKE MKEEAIDEMM TLEDFLAKAG AVEDSAGGDD MDVKAFANVT ERLSGGVYAF  120
DQPAAASPFQ VEGAIVGFGN GVEVVGGRGK RGRVMLEPLD KAAQQRQRRM IKNRESAARS  180
RERKQAYQVE LESLAVRLEE ENEQLLKEKA ERTKERYKQL MEKVVPVVEK KRPPRVLRRV  240
QSAEW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.106720.0fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473064.11e-179G-box-binding factor 4
SwissprotP427778e-67GBF4_ARATH; G-box-binding factor 4
TrEMBLV4SJ331e-177V4SJ33_9ROSI; Uncharacterized protein
STRINGXP_006473064.11e-179(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.16e-43bZIP family protein