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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024964m | ||||||||
Common Name | CISIN_1g021624mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 261aa MW: 27718.4 Da PI: 11.3527 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.3 | 5.7e-07 | 232 | 252 | 5 | 25 |
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 +r+rr++kNRe+A rsR+RK+ orange1.1g024964m 232 RRQRRMIKNRESAARSRARKQ 252 79******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.6E-6 | 227 | 254 | No hit | No description |
CDD | cd14707 | 1.41E-12 | 232 | 254 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 235 | 250 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MPQAQRQQTL GEMTLEEFLV RAGVVREDLQ FGGGVGGKVN GNSGLFGDLS RSANNTGMGI 60 GFQQMGKGAS LMGNRNLETG NQINIQSSNL PLNVNGARMN QHPLAQQQHN QQTQQQPQQP 120 QIFPKQPAMA YATQMPLQSS PGIKSGIVVV GDQAMNGNLI QGGALQGGGM GMVGLGAPPV 180 GVSLGSPANQ LSSDGIGKSN GDTSSVSPVP YMFNGSLRGR RFNGNVEKVV ERRQRRMIKN 240 RESAARSRAR KQVKFCLIYL * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8945 | 0.0 | callus| fruit| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024952251.1 | 1e-177 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2 | ||||
Refseq | XP_024952252.1 | 1e-177 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X3 | ||||
Swissprot | Q9M7Q4 | 2e-60 | AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | A0A067GZP6 | 0.0 | A0A067GZP6_CITSI; Uncharacterized protein | ||||
STRING | XP_006473314.1 | 1e-176 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.2 | 6e-55 | abscisic acid responsive elements-binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024964m |
Publications ? help Back to Top | |||
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