PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024359m
Common NameCISIN_1g016887mg, LOC102622694
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 269aa    MW: 29922.8 Da    PI: 7.0883
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024359mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.1e-071374655
                       S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
           Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                       +f++ +++e+e   ++  n  ps+e    LA+k            ++ +qV +WFqNrR+  
  orange1.1g024359m 13 RFNPAEVTEMEGILQEhhNAMPSREILVALAEKFsesperkgkiMVQMKQVWNWFQNRRYAI 74
                       588889999999999766889*********************999**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-11475IPR009057Homeodomain-like
SMARTSM003894.3E-4781IPR001356Homeobox domain
PfamPF000466.2E-51374IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-91380IPR009057Homeodomain-like
CDDcd000867.26E-61375No hitNo description
PROSITE profilePS500719.6851377IPR001356Homeobox domain
PfamPF167197.9E-39143260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFNPAEVT EMEGILQEHH NAMPSREILV ALAEKFSESP ERKGKIMVQM  60
KQVWNWFQNR RYAIRAKSIK SPGKLNVTPL ARDDSTPGRN VPQPVAAPIP IPMSASVPPT  120
MPASANVPSV STAGRAASES TFMEFEAKSA RDGAWYDVSA FLAQRNFDTA DPEVQVRFAG  180
FGAEEDEWVN IKRHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AHVLDAQRRR  240
HDVRGCRCRF LVRYDHDQSE VATTSCYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-421432604121SHH1 SAWADEE
4iur_B7e-421432604121SHH1 SAWADEE
4iut_A7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-421432604121SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.83181e-131callus| flower
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464827.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-133SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A067ETT30.0A0A067ETT3_CITSI; Uncharacterized protein
STRINGXP_006464825.10.0(Citrus sinensis)
STRINGXP_006451761.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-119sequence-specific DNA binding transcription factors;sequence-specific DNA binding