PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021676m
Common NameCISIN_1g015258mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 310aa    MW: 34807.1 Da    PI: 8.4624
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021676mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10125165545
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  orange1.1g021676m 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165
                        788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-8114168No hitNo description
SMARTSM003382.7E-9121184IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415123167IPR004827Basic-leucine zipper domain
PfamPF001701.6E-7125165IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-7125168No hitNo description
CDDcd147081.37E-23125177No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
PfamPF141446.5E-30207280IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MENAVDLSRN SVFYQMKTGN QAVGTDVQFG TLSKTLASSD INLSSHIVGS QSMPLQKEPQ  60
SNLISVSSGH RENWGESNMA EASPITDTST DDTEDKNQRF ERGQLTAVAA SDSSDKSKEK  120
SGDQKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ QGIFISSSGD  180
QSHSMSGNGA AAFDVEYSRW LEEHNRHIVE LRAAVNSHAG DTELRTIVDN VTSHFDEIFR  240
LKGIASKADV FHILSGMWKT PAERCFMWIG GFRSSELLKV SRLLIAIVPT GIWLLFFFYF  300
LFFIFYFFG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421096.10.0transcription factor HBP-1b(c38)
RefseqXP_006421097.10.0transcription factor HBP-1b(c38)
RefseqXP_006477494.10.0transcription factor HBP-1b(c38)
RefseqXP_024954454.10.0transcription factor HBP-1b(c38)
SwissprotQ415581e-122HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A067DTM50.0A0A067DTM5_CITSI; Uncharacterized protein
STRINGXP_006477494.10.0(Citrus sinensis)
STRINGXP_006421095.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.25e-79TGACG motif-binding factor 6