PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g018357m

Common Name

CISIN_1g018357mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 358aa MW: 39515.7 Da PI: 7.788

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g018357m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5e-10	70	108	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 k+ rr+++NReAAr+sR+RKka++++Le+ + ++Le orange1.1g018357m 70 QKALRRLAQNREAARKSRLRKKAYVQQLENsrlRLAQLE 108 5889*************************8333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-7	66	113	No hit	No description
SMART	SM00338	4.1E-8	67	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.301	69	113	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.71E-21	71	123	No hit	No description
Pfam	PF00170	1.9E-6	71	109	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-6	71	113	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	156	229	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MFQKGTTIGS SLGSGHIENW GESGIGDNSQ QTDTSTDVDT DDKNQVNGVR RGVPIVTGSM 60 EQSKIKTGDQ KALRRLAQNR EAARKSRLRK KAYVQQLENS RLRLAQLEQE LQRARQQGIF 120 IATGVSGDIG HSVAGNGVLA FDLDYVHWVD EHQRLINDLR SAVNSSMGDN ELRHLVDGVM 180 AHYEEVFQLK SIGTKADVFH MLSGMWKTPV ERCFMWLGGF RSSELLKVIG NHLEPLTDQQ 240 LMGICNLQQS SQQAEDALSQ GMEALQQSLV DTLSASSLGP TSSGNVADYM GQMALAMGKL 300 ATLENFIHQA DLLRQQTLQQ MHRILTARQA ARALLVINDY TSRLRALSSL WLARPRG*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MFQKGTTIGS SLGSGHIENW GESGIGDNSQ QTDTSTDVDT DDKNQVNGVR RGVPIVTGSM  60
EQSKIKTGDQ KALRRLAQNR EAARKSRLRK KAYVQQLENS RLRLAQLEQE LQRARQQGIF  120
IATGVSGDIG HSVAGNGVLA FDLDYVHWVD EHQRLINDLR SAVNSSMGDN ELRHLVDGVM  180
AHYEEVFQLK SIGTKADVFH MLSGMWKTPV ERCFMWLGGF RSSELLKVIG NHLEPLTDQQ  240
LMGICNLQQS SQQAEDALSQ GMEALQQSLV DTLSASSLGP TSSGNVADYM GQMALAMGKL  300
ATLENFIHQA DLLRQQTLQQ MHRILTARQA ARALLVINDY TSRLRALSSL WLARPRG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.5096	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269\|PubMed:9990857}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024042361.1	0.0	transcription factor TGA2.3 isoform X1
Refseq	XP_024042362.1	0.0	transcription factor TGA2.3 isoform X1
Swissprot	Q9SX27	1e-171	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A067FV38	0.0	A0A067FV38_CITSI; Uncharacterized protein
TrEMBL	V4VEQ8	0.0	V4VEQ8_9ROSI; Uncharacterized protein
STRING	XP_006437714.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-144	bZIP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g018357m

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]