PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018176m
Common NameCISIN_1g016887mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 361aa    MW: 39283.3 Da    PI: 7.9016
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018176mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.6e-0610532255
                       SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
           Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                       n  ps+e    LA+k            ++ +qV +WFqNrR+  
  orange1.1g018176m 10 NAMPSREILVALAEKFsesperkgkiMVQMKQVWNWFQNRRYAI 53
                       56678888888888888888888877999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.766156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-6159IPR009057Homeodomain-like
SuperFamilySSF466896.42E-9857IPR009057Homeodomain-like
CDDcd000863.14E-4854No hitNo description
PfamPF167196.8E-41122248IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEGILQEHHN AMPSREILVA LAEKFSESPE RKGKIMVQMK QVWNWFQNRR YAIRAKSIKS  60
PGKLNVTPLA RDDSTPGRNV PQPVAAPIPI PMSASVPPTM PASANVPSVS TAGRAASEST  120
FMEFEAKSAR DGAWYDVSAF LAQRNFDTAD PEVQVRFAGF GAEEDEWVNI KRHVRQRSLP  180
CEASECVAVL PGDLILCFQE GKDQALYFDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE  240
IVPLRKVCRR PETDYRLQQL HAMNDSVMVD HQKTSADLSA STATRVTVSS AEMMHKQVNA  300
NIAQGAPLSH SFVSVPAQTV EPKNASASSG ISSSNPAVPP GGAAVISGTA ATTAATGHPS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-471222524134SHH1 SAWADEE
4iur_B1e-471222524134SHH1 SAWADEE
4iut_A1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-471222524134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.83180.0callus| flower
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451761.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_006464825.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-140SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A067EX900.0A0A067EX90_CITSI; Uncharacterized protein
STRINGXP_006464825.10.0(Citrus sinensis)
STRINGXP_006451761.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-122sequence-specific DNA binding transcription factors;sequence-specific DNA binding