PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014471m
Common NameCISIN_1g014471mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 425aa    MW: 46798.9 Da    PI: 6.792
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014471mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.3e-11324373554
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                        kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  ++  l+ 
  orange1.1g014471m 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQV 373
                        9****************************************988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-14320384IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.369322378IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.31E-12324378No hitNo description
Gene3DG3DSA:1.20.5.1705.2E-12324378No hitNo description
PfamPF001709.4E-11324376IPR004827Basic-leucine zipper domain
CDDcd147033.35E-23325372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSPDSNKRPG IPPSHPNNNN PNAISLPFSH MVLPSSHYRP LLDSLPPLSP SMSSFSDPNS  60
GNNTTSVCID ERVVNSLGLS IPSPVNRVTN NNGSRVSENL PPRRGHRRSS SDIPLGFSAM  120
IQSSTQLIPI GSKGAIEKPI QLVKQESEWN NVKKDASRNV EGMGERKSEE DVADDLFNEY  180
MNLENIDTLN SSCTEDKDMD SRASGSKTNG CESSDNEVES RVYGRSSSGI LSEKREGIKR  240
SACGDIAPTV RHCRSVSMDS YMGNLPFDDE SLRLPPGGQL SPGNPSDGNL AKMSLEFNGE  300
FNDAELKKIW ANEKLAEIAL SDPKRAKRIL ANRQSAARSK ERKMRYISEL EQKVQTLQTE  360
ATTLSAQVTI LQVSIAELIL PIAEFLIVLL PFLIRAILIV HLFVFLTLFF FREILRGLQV  420
RTMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.86820.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435132.10.0transcription factor RF2a
TrEMBLA0A067GYX40.0A0A067GYX4_CITSI; Uncharacterized protein
STRINGXP_006435132.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.39e-86bZIP family protein