PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010311m
Common NameCISIN_1g010311mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 514aa    MW: 57999.2 Da    PI: 8.1905
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010311mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-181569357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       kR+  t+ q+ +Le+++++++yp++e++ + A+++gLte+qV+ WF+ rR kek+
  orange1.1g010311m 15 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 69
                       78899*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-19269IPR009057Homeodomain-like
PROSITE profilePS5007116.1151070IPR001356Homeobox domain
SuperFamilySSF466891.03E-161172IPR009057Homeodomain-like
SMARTSM003891.6E-171374IPR001356Homeobox domain
CDDcd000862.60E-161569No hitNo description
PfamPF000464.3E-161569IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MHSEENKVSL EKNIKRRYKT PAQVMALEKF YNEHKYPTEE MKSQVAEQIG LTEKQVSGWF  60
CHRRLKEKRL SVDEAFVGGR QDRSSGVIQD RGSGLRQDSC GSTKQGDYRS IDPREVQSRM  120
LYCHDFPATD LAYDRNQYAA HASERDDTSS ESSSFLQDRL YSESDKPYAN ETSRFVRQNG  180
DVTPVRCNIG RSKEYKPSGY LKVKGESENA AISAVKRQLG RHYREDGPPL GVDFDPLPPG  240
AFESPSGDPV NEPFYVGNSR WSNSPEVPEI DKPRALGTRY EVDSSKMDLQ DSYIDENLNS  300
KRSDYAGTKS HNQLKQKSPL LHYSNFSPHQ NSSLNAYEDS TPVYDGNHCY SLSSKHDAEW  360
MGLNSVMNHH EPHGGKTNSE EAKPLLNDNH VVSSKMVRNS NYFTRPSNFT LGISKSLDAK  420
DKGTSTKMAK VKKLYKEKKA IKGLRDPVSV KTHLNNEMNV VKRLKGELPQ RDYIAKASYA  480
EIPRWTNPIK GSAAEMPSSF SEDETAETNS SME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.179500.0callus
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470565.10.0uncharacterized protein LOC102611835
TrEMBLA0A067EVA80.0A0A067EVA8_CITSI; Uncharacterized protein
STRINGXP_006470565.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-90HB-other family protein