PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g001774m

Common Name

CISIN_1g001774mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1016aa MW: 111053 Da PI: 5.2383

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g001774m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	603	654	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ orange1.1g001774m 603 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 654 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	593	674	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	606	654	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.71E-23	902	992	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-24	905	986	No hit	No description
PROSITE profile	PS51745	23.136	907	989	IPR000270	PB1 domain
SMART	SM00666	5.7E-23	907	989	IPR000270	PB1 domain
CDD	cd06407	2.45E-33	908	988	No hit	No description
Pfam	PF00564	3.1E-17	910	988	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1016 aa Download sequence Send to blast
MEHPFSPKEK GTGYWASPRA PMENLAPLDC GTRSSNSGDL FNNFSDLLNF DAYAGWCNSP 60 SVTDQMFASY GFSSFQSTPC ASFDTSNVMA SNSSVASEGG GTSNAMESSF DRGDRIGFQQ 120 TSTDCYPIDT NDADDLVPKQ SSGVYRENNT NMSNSMICRP VPPSLDEKML RALSFFKLSS 180 GGGILAQVWV PRKQGDDYIL STSDQPYLLD QMLAGYREVS RKFTFSAEAK PGTFLGLPGR 240 VFSSKVPEWT SNVAYYNEAE YARVTHAVNH AVRSCIALPV FQFPEISCSA VLEIVSVKEK 300 PNFDAEIENI CNALQAVNLR TTAPPRLLPQ VSSELNISRN QKAALAEITD VLRAVCHAHR 360 LPLALTWIPC NYDEEAVDEV IKVRVRHSNT SSDGKSVLCI EGTACYVNDS DMQGFVHACS 420 EHYLEEGQGV AGKALQSNHP FFFPDVKLYD ITEFPLVHHA RKFGLNAAVA IRLRSTYTGD 480 DDYILEFFLP VTIKGSSEQQ LLLNNLSGTM QRMCRSLRTV SDAELIQDEG SKFGFQKEVV 540 SNFPPMVMSR RNSQSALSDS DFNSIEKITL SVSNSKSGLE ADGPPEQVMS GSRRPMEKKR 600 STAEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLKK 660 IQTVLNSVQG VEGGLKFDPT TGGFVAAGSI IQEFDAQKSS LHPDKNMPVR NSESITKDST 720 SIPPTLSIDG EKFVVKVEED ECSVDKNQVG PLSMLIQNSS KGELNKSSVN LIDCSEDSKL 780 ILTDAGPFWQ ARLGTAAWDS PDTASMVSYY AKGGEKGARN KNGLQLESSD CHFVSQSSNS 840 LAAADNMDTR REGDDGIIEN NQPTTSSTTD SSNGSGSLVH ASSVSSPSFE EGKHLKIHPG 900 SDDIGSKIIV KATYKEDIIR FKFDPSAGCF QLYEEVARRL KLQNGTFQLK YLDDEEEWVM 960 LVSDSDLQEC FDILESLGKR SVRFLVRDIS CNVGSSGSSN CFLAGSSSCF LAGVS*

Sequence ? help Back to Top

Protein Sequence Length: 1016 aa Download sequence Send to blast

MEHPFSPKEK GTGYWASPRA PMENLAPLDC GTRSSNSGDL FNNFSDLLNF DAYAGWCNSP  60
SVTDQMFASY GFSSFQSTPC ASFDTSNVMA SNSSVASEGG GTSNAMESSF DRGDRIGFQQ  120
TSTDCYPIDT NDADDLVPKQ SSGVYRENNT NMSNSMICRP VPPSLDEKML RALSFFKLSS  180
GGGILAQVWV PRKQGDDYIL STSDQPYLLD QMLAGYREVS RKFTFSAEAK PGTFLGLPGR  240
VFSSKVPEWT SNVAYYNEAE YARVTHAVNH AVRSCIALPV FQFPEISCSA VLEIVSVKEK  300
PNFDAEIENI CNALQAVNLR TTAPPRLLPQ VSSELNISRN QKAALAEITD VLRAVCHAHR  360
LPLALTWIPC NYDEEAVDEV IKVRVRHSNT SSDGKSVLCI EGTACYVNDS DMQGFVHACS  420
EHYLEEGQGV AGKALQSNHP FFFPDVKLYD ITEFPLVHHA RKFGLNAAVA IRLRSTYTGD  480
DDYILEFFLP VTIKGSSEQQ LLLNNLSGTM QRMCRSLRTV SDAELIQDEG SKFGFQKEVV  540
SNFPPMVMSR RNSQSALSDS DFNSIEKITL SVSNSKSGLE ADGPPEQVMS GSRRPMEKKR  600
STAEKNVSLS VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLKK  660
IQTVLNSVQG VEGGLKFDPT TGGFVAAGSI IQEFDAQKSS LHPDKNMPVR NSESITKDST  720
SIPPTLSIDG EKFVVKVEED ECSVDKNQVG PLSMLIQNSS KGELNKSSVN LIDCSEDSKL  780
ILTDAGPFWQ ARLGTAAWDS PDTASMVSYY AKGGEKGARN KNGLQLESSD CHFVSQSSNS  840
LAAADNMDTR REGDDGIIEN NQPTTSSTTD SSNGSGSLVH ASSVSSPSFE EGKHLKIHPG  900
SDDIGSKIIV KATYKEDIIR FKFDPSAGCF QLYEEVARRL KLQNGTFQLK YLDDEEEWVM  960
LVSDSDLQEC FDILESLGKR SVRFLVRDIS CNVGSSGSSN CFLAGSSSCF LAGVS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11858	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056271	0.0	KX056271.1 Citrus trifoliata transcription factor NLP8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442938.1	0.0	protein NLP9 isoform X1
Refseq	XP_006478831.1	0.0	protein NLP9-like isoform X1
Refseq	XP_006478832.1	0.0	protein NLP9-like isoform X1
Refseq	XP_015386040.1	0.0	protein NLP9-like isoform X1
Refseq	XP_024043638.1	0.0	protein NLP9 isoform X1
Refseq	XP_024043639.1	0.0	protein NLP9 isoform X1
Refseq	XP_024955270.1	0.0	protein NLP9-like isoform X1
Refseq	XP_024955271.1	0.0	protein NLP9-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A067EA72	0.0	A0A067EA72_CITSI; Uncharacterized protein
STRING	XP_006478830.1	0.0	(Citrus sinensis)
STRING	XP_006442937.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g001774m

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]