PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001086m
Common NameCISIN_1g001088mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 1160aa    MW: 130695 Da    PI: 7.5344
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001086mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox391.4e-12755856
                       -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       t+ q ++L +++ +++yp+++e+e LA+ l+Lt +qV++WF  +R ++k
  orange1.1g001086m  7 TPLQAKALLKFYSEEKYPTKSEMEGLAAALDLTYKQVRTWFIEKRRRDK 55
                       899******************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-8161IPR001356Homeobox domain
PROSITE profilePS5007112.795157IPR001356Homeobox domain
CDDcd000867.81E-11555No hitNo description
Gene3DG3DSA:1.10.10.601.5E-11555IPR009057Homeodomain-like
SuperFamilySSF466899.84E-12657IPR009057Homeodomain-like
PfamPF000464.8E-10655IPR001356Homeobox domain
PROSITE profilePS5082712.009374433IPR018501DDT domain
SMARTSM005711.5E-10374433IPR018501DDT domain
PfamPF027915.3E-11375430IPR018501DDT domain
PfamPF156123.5E-6657694IPR028942WHIM1 domain
PfamPF156135.8E-10787860IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1160 aa     Download sequence    Send to blast
MEVKRKTPLQ AKALLKFYSE EKYPTKSEME GLAAALDLTY KQVRTWFIEK RRRDKGDNGI  60
VIPSSSSKKL KGFHGRNRLG VVSAKIVKKQ DSLIHNKHLS LMVCNGTGKK KNAVTVLQDL  120
LTSDYILKKV FRKDGPPLGV EFDSLPSQAF FRSKDSINSC PPLQENQTAK RKRKVSIHDE  180
LDHQECCTNT DHVRKHGMGK GLMTAWRVMN PNGGTVPTGI DVADRQVTVV PQMATPLSQK  240
PPLRKKRAQQ IVSLLKQRRL ANNLQSKRKP VAKGKQVKLD KGERLRQPNK EKCELAPDSV  300
ISQERLDQIA MLVDDEELEL RELEVGPNPP TCCDHISTKG LHGCSLCRDL LAKFPPNSVK  360
MKQPFGTQPW DSSPETVKKL FKVFHFLCTY AGIVDICSFT LDEFAQAFHD KDSMLLGKIH  420
VALLKLLLSD VEMELGRGCP PHLSVSCKFL ALLHSVENQE FFVEFWNKSL NPLTWTEILR  480
QVLVAAGFGS KQGSSRKESL SKEMILMLKY GLRPGTLKGE LFRILLEQGN NGSKVCQLAR  540
SSQIAELNLE STTEEVELLI SSTLSSDITL FEKIASSTYR LRINTSKEAD DFESDAEDIG  600
SVDDNSDDDD TCSNRDDSEC NSENQRQRRP KYLNCCKSEN NMLTVYMEID ESHRGDVWLS  660
GLMEGEYSDL TIDEKLNALV GLIDLVSAGS SIRMEDPTKA IAESVPSVRH YGSGAKIKRA  720
LPNQHSLPRP SWVHAGDFHG VRETNTSREL HPLDSFSLIS KSCGKEKSSS VKDAKATEVS  780
TDLHPMQSIY LGSDRRYNRY WLFLGPCNEY DPGHKRVYFE SSEDGHWEVI DTEEALRALL  840
SVLDDRGRQE ALLIESLEKR EAFLCQAMSS GLVNNTEIRH VAQSDQSELD LVREDSSSPV  900
SDVDNNLALS EIGKESLPSC GAIVLDVGKK GEEQHRMWSR LQEFDAWIWN SFYLNLNAVK  960
HGKRSYLDAL ARCERCHDLY WRDEKHCKIC HTTFELDFDL EERYAVHAAT CRGKGDHLVS  1020
KHKILSSQLQ SLKAAVHAIE SVMPEDALVG AWTKSAHKLW VKRLRRTSSL AELLQVVADF  1080
VSAINEGWLY QWNVQIADTV MGEIIAFFPT MPQTSSALAL WLVKLDAIIA PYLERVNSGK  1140
EDARMRCRGI FLFPQRPFI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.85270.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044693e-49AP004469.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15D01, TM0004a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469383.10.0homeobox-DDT domain protein RLT3
RefseqXP_006469384.10.0homeobox-DDT domain protein RLT3
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A067EIJ00.0A0A067EIJ0_CITSI; Uncharacterized protein
STRINGXP_006469383.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator