PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g000285m

Common Name

CISIN_1g000279mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1723aa MW: 194639 Da PI: 5.3724

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g000285m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	34	89	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgL++rq ++WF+ rR k+kk orange1.1g000285m 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	20	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-16	24	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	30	90	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	32	94	IPR001356	Homeobox domain
Pfam	PF00046	6.7E-17	34	89	IPR001356	Homeobox domain
CDD	cd00086	6.52E-13	35	87	No hit	No description
SMART	SM00571	1.1E-21	541	600	IPR018501	DDT domain
PROSITE profile	PS50827	16.644	541	600	IPR018501	DDT domain
Pfam	PF02791	2.6E-17	542	597	IPR018501	DDT domain
Pfam	PF05066	1.9E-15	717	784	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.7E-8	927	969	IPR028942	WHIM1 domain
Pfam	PF15613	9.2E-13	1110	1182	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1723 aa Download sequence Send to blast
MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES 60 TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP 120 GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG 180 EPLREDGPIL GMEFDSLPPD AFGAPIGSSE QQKRSGHPYE SKIYDRYDTK SNKVIPRAHH 240 EYQSLSDQPY FHGSPIDGSR ARTSFLHANE PSSRVHGVQG HVARVRVLSQ QDKPAHIFSS 300 PNGGEDSLLQ RESTSNNRKN AQSTSHPIFG TEDPYLLSDG QTFNNDAEQR MEKKRKCDEA 360 RIAREVEANE IRIQKELERQ DNLRRKNEER MRKEMEKHER ERRKEEERLM RERQREEERS 420 LREQKREMER REKFLQKEYL RAEKRRLKEE LRMEKQAAKR KVAIEKATAR KMAKESMDLI 480 EDEQLELMDL AAASKGLSSI IHLDLETLQN LDSFRDSLSV FPPKTVRLKR PFSVQPWSDS 540 EENVGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDHES RLLGEIHLAL LKSIIKDIED 600 VARTPSTGLG MNQYCAANPE GGHPRIIEGA YAWGFDIRNW QQLLNPLTWH EIFRQLALSA 660 GFGPKLKKRS SKWANGKGCE DIVSTIRNGS AAENAFAWMR EKGLLLPRRS RHKLTPGTVK 720 FAAFHVLSLE GSKGLTVLEL ADKIQKSGLR DLTTSKTPEA SISVALTRDT KLFERIAPST 780 YCVRPAFRKD PADAEAILAA ARKKIRIFEN GFLGGEDADD VERDEDSECD VEEDPEVEDL 840 ATPSSANKNI DRYDEANTCL VSGKDNACND VALSVQNEVD KGFSSFSLND SKDARCQGTA 900 DNYVAVEDFG ASHLNQENIE IDESKPGESW IQGLAEGDYS HLSVEERLNA LVALIGIANE 960 GNSIRAVLED RLEAANALKK QMWAEAQLDK SRLKEENITK LDFTPAMGSK AETHLASSAA 1020 EGGQSPLPVF VDNKNEASPS LAEDQKPMFG SQVFQNHLSE FPNERTVAVQ DPSTGLDNLA 1080 TQQHGYASKR SRSQLKAYIA HMAEEMYVYR SLPLGQDRRR NRYWQFATSA SRNDPCSGRI 1140 FVELHDGTWR LIDTVEAFDA LLSSLDARGT RESHLRIMLQ KIETSFKDKV RRNLQGIDTV 1200 GQSWTAIKNE AAEMDVDPDF ASSDSPSSTV CGLNSDTLET SSSFRIELGR NEIEKKAALE 1260 RFQDFQWWMW RECFNSLSLC ASKNEKTRCR QLLVICDVCL DSYLCEDAHC PSCHRTFGAV 1320 DKSSKFSEHS IQCEEKTKLG LRDIHVSDSS LPLGIRLLKP LSAVIEAYIP PEALEASWTD 1380 ERRKTWGMKL NMSSSAEEVL QLLTILESGI KRSYLSSNFE TTKELLGSSF TCADPWSVPI 1440 LPWIPKTTAA VALRLLELDA SIMYVKPEKP EQFEEDKEAN ERVIPSRYLP LKNKEVVLKE 1500 LDQDRLVKEE NYSNLAGKRK NYRRGKGNRD HGWSRKYHKK TPSITADVGR RTAREHEGLN 1560 LRLKQQGLRT NGRGRRTVRK RADRTSKNET FQGQMGHMVI PDSSSGLHRN LDEEEWGVGK 1620 ERMINMEDAE NSNSAEAVDS DDNVQAVEYE QGNWEVGFNG ATNGWNRDVM EVSDEDEDAF 1680 GDDAGIEEAV DEYSEGNIDM SEASDQNGID DGVDSAASEY SD*

Sequence ? help Back to Top

Protein Sequence Length: 1723 aa Download sequence Send to blast

MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES  60
TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP  120
GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG  180
EPLREDGPIL GMEFDSLPPD AFGAPIGSSE QQKRSGHPYE SKIYDRYDTK SNKVIPRAHH  240
EYQSLSDQPY FHGSPIDGSR ARTSFLHANE PSSRVHGVQG HVARVRVLSQ QDKPAHIFSS  300
PNGGEDSLLQ RESTSNNRKN AQSTSHPIFG TEDPYLLSDG QTFNNDAEQR MEKKRKCDEA  360
RIAREVEANE IRIQKELERQ DNLRRKNEER MRKEMEKHER ERRKEEERLM RERQREEERS  420
LREQKREMER REKFLQKEYL RAEKRRLKEE LRMEKQAAKR KVAIEKATAR KMAKESMDLI  480
EDEQLELMDL AAASKGLSSI IHLDLETLQN LDSFRDSLSV FPPKTVRLKR PFSVQPWSDS  540
EENVGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDHES RLLGEIHLAL LKSIIKDIED  600
VARTPSTGLG MNQYCAANPE GGHPRIIEGA YAWGFDIRNW QQLLNPLTWH EIFRQLALSA  660
GFGPKLKKRS SKWANGKGCE DIVSTIRNGS AAENAFAWMR EKGLLLPRRS RHKLTPGTVK  720
FAAFHVLSLE GSKGLTVLEL ADKIQKSGLR DLTTSKTPEA SISVALTRDT KLFERIAPST  780
YCVRPAFRKD PADAEAILAA ARKKIRIFEN GFLGGEDADD VERDEDSECD VEEDPEVEDL  840
ATPSSANKNI DRYDEANTCL VSGKDNACND VALSVQNEVD KGFSSFSLND SKDARCQGTA  900
DNYVAVEDFG ASHLNQENIE IDESKPGESW IQGLAEGDYS HLSVEERLNA LVALIGIANE  960
GNSIRAVLED RLEAANALKK QMWAEAQLDK SRLKEENITK LDFTPAMGSK AETHLASSAA  1020
EGGQSPLPVF VDNKNEASPS LAEDQKPMFG SQVFQNHLSE FPNERTVAVQ DPSTGLDNLA  1080
TQQHGYASKR SRSQLKAYIA HMAEEMYVYR SLPLGQDRRR NRYWQFATSA SRNDPCSGRI  1140
FVELHDGTWR LIDTVEAFDA LLSSLDARGT RESHLRIMLQ KIETSFKDKV RRNLQGIDTV  1200
GQSWTAIKNE AAEMDVDPDF ASSDSPSSTV CGLNSDTLET SSSFRIELGR NEIEKKAALE  1260
RFQDFQWWMW RECFNSLSLC ASKNEKTRCR QLLVICDVCL DSYLCEDAHC PSCHRTFGAV  1320
DKSSKFSEHS IQCEEKTKLG LRDIHVSDSS LPLGIRLLKP LSAVIEAYIP PEALEASWTD  1380
ERRKTWGMKL NMSSSAEEVL QLLTILESGI KRSYLSSNFE TTKELLGSSF TCADPWSVPI  1440
LPWIPKTTAA VALRLLELDA SIMYVKPEKP EQFEEDKEAN ERVIPSRYLP LKNKEVVLKE  1500
LDQDRLVKEE NYSNLAGKRK NYRRGKGNRD HGWSRKYHKK TPSITADVGR RTAREHEGLN  1560
LRLKQQGLRT NGRGRRTVRK RADRTSKNET FQGQMGHMVI PDSSSGLHRN LDEEEWGVGK  1620
ERMINMEDAE NSNSAEAVDS DDNVQAVEYE QGNWEVGFNG ATNGWNRDVM EVSDEDEDAF  1680
GDDAGIEEAV DEYSEGNIDM SEASDQNGID DGVDSAASEY SD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	89	RRLKDKKE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467730.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A067GDF0	0.0	A0A067GDF0_CITSI; Uncharacterized protein
STRING	XP_006467729.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	orange1.1g000285m