PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g000279m

Common Name

CISIN_1g000279mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1730aa MW: 195362 Da PI: 5.3436

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g000279m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.1e-19	34	89	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgL++rq ++WF+ rR k+kk orange1.1g000279m 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	20	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-16	24	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	30	90	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	32	94	IPR001356	Homeobox domain
Pfam	PF00046	6.7E-17	34	89	IPR001356	Homeobox domain
CDD	cd00086	6.25E-13	35	87	No hit	No description
SMART	SM00571	1.1E-21	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	16.644	542	601	IPR018501	DDT domain
Pfam	PF02791	2.6E-17	543	598	IPR018501	DDT domain
Pfam	PF05066	1.9E-15	724	791	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.7E-8	934	976	IPR028942	WHIM1 domain
Pfam	PF15613	9.2E-13	1117	1189	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1730 aa Download sequence Send to blast
MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES 60 TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP 120 GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG 180 EPLREDGPIL GMEFDSLPPD AFGAPIAGSS EQQKRSGHPY ESKIYDRYDT KSNKVIPRAH 240 HEYQSLSDQP YFHGSPIDGS RARTSFLHAN EPSSRVHGVQ GHVARVRVLS QQDKPAHIFS 300 SPNGGEDSLL QRESTSNNRK NAQSTSHPIF GTEDPYLLSD GQTFNNDAEQ RMEKKRKCDE 360 ARIAREVEAN EIRIQKELER QDNLRRKNEE RMRKEMEKHE RERRKEEERL MRERQREEER 420 SLREQKREME RREKFLQKEY LRAEKRRLKE ELRMEKQAAK RKVAIEKATA RKMAKESMDL 480 IEDEQLELMD LAAASKGLSS IIHLDLETLQ NLDSFRDSLS VFPPKTVRLK RPFSVQPWSD 540 SEENVGNLLM VWRFFITFAD VLGLWPFTLD EFVQAFHDHE SRLLGEIHLA LLKSIIKDIE 600 DVARTPSTGL GMNQYCAANP EGGHPRIIEG AYAWGFDIRN WQQLLNPLTW HEIFRQLALS 660 AGFGPKLKKR SSKWANVGDN HEGKGCEDIV STIRNGSAAE NAFAWMREKG LLLPRRSRHK 720 LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDTKLF 780 ERIAPSTYCV RPAFRKDPAD AEAILAAARK KIRIFENGFL GGEDADDVER DEDSECDVEE 840 DPEVEDLATP SSANKNIDRY DEANTCLVSG KDNACNDVAL SVQNEVDKGF SSFSLNDSKD 900 ARCQGTADNY VAVEDFGASH LNQENIEIDE SKPGESWIQG LAEGDYSHLS VEERLNALVA 960 LIGIANEGNS IRAVLEDRLE AANALKKQMW AEAQLDKSRL KEENITKLDF TPAMGSKAET 1020 HLASSAAEGG QSPLPVFVDN KNEASPSLAE DQKPMFGSQV FQNHLSEFPN ERTVAVQDPS 1080 TGLDNLATQQ HGYASKRSRS QLKAYIAHMA EEMYVYRSLP LGQDRRRNRY WQFATSASRN 1140 DPCSGRIFVE LHDGTWRLID TVEAFDALLS SLDARGTRES HLRIMLQKIE TSFKDKVRRN 1200 LQGIDTVGQS WTAIKNEAAE MDVDPDFASS DSPSSTVCGL NSDTLETSSS FRIELGRNEI 1260 EKKAALERFQ DFQWWMWREC FNSLSLCASK NEKTRCRQLL VICDVCLDSY LCEDAHCPSC 1320 HRTFGAVDKS SKFSEHSIQC EEKTKLGLRD IHVSDSSLPL GIRLLKPLSA VIEAYIPPEA 1380 LEASWTDERR KTWGMKLNMS SSAEEVLQLL TILESGIKRS YLSSNFETTK ELLGSSFTCA 1440 DPWSVPILPW IPKTTAAVAL RLLELDASIM YVKPEKPEQF EEDKEANERV IPSRYLPLKN 1500 KEVVLKELDQ DRLVKEENYS NLAGKRKNYR RGKGNRDHGW SRKYHKKTPS ITADVGRRTA 1560 REHEGLNLRL KQQGLRTNGR GRRTVRKRAD RTSKNETFQG QMGHMVIPDS SSGLHRNLDE 1620 EEWGVGKERM INMEDAENSN SAEAVDSDDN VQAVEYEQGN WEVGFNGATN GWNRDVMEVS 1680 DEDEDAFGDD AGIEEAVDEY SEGNIDMSEA SDQNGIDDGV DSAASEYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1730 aa Download sequence Send to blast

MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES  60
TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP  120
GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG  180
EPLREDGPIL GMEFDSLPPD AFGAPIAGSS EQQKRSGHPY ESKIYDRYDT KSNKVIPRAH  240
HEYQSLSDQP YFHGSPIDGS RARTSFLHAN EPSSRVHGVQ GHVARVRVLS QQDKPAHIFS  300
SPNGGEDSLL QRESTSNNRK NAQSTSHPIF GTEDPYLLSD GQTFNNDAEQ RMEKKRKCDE  360
ARIAREVEAN EIRIQKELER QDNLRRKNEE RMRKEMEKHE RERRKEEERL MRERQREEER  420
SLREQKREME RREKFLQKEY LRAEKRRLKE ELRMEKQAAK RKVAIEKATA RKMAKESMDL  480
IEDEQLELMD LAAASKGLSS IIHLDLETLQ NLDSFRDSLS VFPPKTVRLK RPFSVQPWSD  540
SEENVGNLLM VWRFFITFAD VLGLWPFTLD EFVQAFHDHE SRLLGEIHLA LLKSIIKDIE  600
DVARTPSTGL GMNQYCAANP EGGHPRIIEG AYAWGFDIRN WQQLLNPLTW HEIFRQLALS  660
AGFGPKLKKR SSKWANVGDN HEGKGCEDIV STIRNGSAAE NAFAWMREKG LLLPRRSRHK  720
LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDTKLF  780
ERIAPSTYCV RPAFRKDPAD AEAILAAARK KIRIFENGFL GGEDADDVER DEDSECDVEE  840
DPEVEDLATP SSANKNIDRY DEANTCLVSG KDNACNDVAL SVQNEVDKGF SSFSLNDSKD  900
ARCQGTADNY VAVEDFGASH LNQENIEIDE SKPGESWIQG LAEGDYSHLS VEERLNALVA  960
LIGIANEGNS IRAVLEDRLE AANALKKQMW AEAQLDKSRL KEENITKLDF TPAMGSKAET  1020
HLASSAAEGG QSPLPVFVDN KNEASPSLAE DQKPMFGSQV FQNHLSEFPN ERTVAVQDPS  1080
TGLDNLATQQ HGYASKRSRS QLKAYIAHMA EEMYVYRSLP LGQDRRRNRY WQFATSASRN  1140
DPCSGRIFVE LHDGTWRLID TVEAFDALLS SLDARGTRES HLRIMLQKIE TSFKDKVRRN  1200
LQGIDTVGQS WTAIKNEAAE MDVDPDFASS DSPSSTVCGL NSDTLETSSS FRIELGRNEI  1260
EKKAALERFQ DFQWWMWREC FNSLSLCASK NEKTRCRQLL VICDVCLDSY LCEDAHCPSC  1320
HRTFGAVDKS SKFSEHSIQC EEKTKLGLRD IHVSDSSLPL GIRLLKPLSA VIEAYIPPEA  1380
LEASWTDERR KTWGMKLNMS SSAEEVLQLL TILESGIKRS YLSSNFETTK ELLGSSFTCA  1440
DPWSVPILPW IPKTTAAVAL RLLELDASIM YVKPEKPEQF EEDKEANERV IPSRYLPLKN  1500
KEVVLKELDQ DRLVKEENYS NLAGKRKNYR RGKGNRDHGW SRKYHKKTPS ITADVGRRTA  1560
REHEGLNLRL KQQGLRTNGR GRRTVRKRAD RTSKNETFQG QMGHMVIPDS SSGLHRNLDE  1620
EEWGVGKERM INMEDAENSN SAEAVDSDDN VQAVEYEQGN WEVGFNGATN GWNRDVMEVS  1680
DEDEDAFGDD AGIEEAVDEY SEGNIDMSEA SDQNGIDDGV DSAASEYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	89	RRLKDKKE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467729.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A067GGC8	0.0	A0A067GGC8_CITSI; Uncharacterized protein
STRING	XP_006467729.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	orange1.1g000279m