PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.367300.1
Common NameCsa_2G279260, LOC101209150
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 160aa    MW: 17779 Da    PI: 9.8382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.367300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-171261255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++kG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++aa   l+g
  Cucsa.367300.1 12 QFKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDAAVFHLRG 61
                    79*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.86E-191170No hitNo description
PROSITE profilePS5103221.5621269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-291270IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-201270IPR016177DNA-binding domain
SMARTSM003803.7E-331275IPR001471AP2/ERF domain
PRINTSPR003671.3E-101324IPR001471AP2/ERF domain
PfamPF008472.6E-101361IPR001471AP2/ERF domain
PRINTSPR003671.3E-105171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKDRKEEKKS KQFKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAR AYDAAVFHLR  60
GPTARLNFPD FLTTTVDRAS SFPLSAAAVR KIAAEVGAQV DALESSRRHS SDQSCSLNPT  120
KLRCCSYSCS SGFSDRVDLN KFPDPEDSDG DCVSTHWTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-15969263ATERF1
3gcc_A5e-15969263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149688.11e-115PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotO221741e-52ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0A0LLV51e-113A0A0A0LLV5_CUCSA; Uncharacterized protein
STRINGXP_004149688.11e-114(Cucumis sativus)
STRINGXP_004168033.11e-114(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.19e-48DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]