PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.365320.1
Common NameCsa_6G039270, LOC101218540
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 319aa    MW: 35483.4 Da    PI: 4.2646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.365320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-19119168154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA +a++  r+++e
  Cucsa.365320.1 119 SQYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTYNTAEEASQAYESKRLEFE 168
                     78*******9.**********55.....45**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-12119168IPR001471AP2/ERF domain
CDDcd000183.40E-24119173No hitNo description
SuperFamilySSF541713.33E-17119169IPR016177DNA-binding domain
SMARTSM003802.1E-18120181IPR001471AP2/ERF domain
PROSITE profilePS5103219.664120181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-22120170IPR001471AP2/ERF domain
PRINTSPR003672.5E-10121132IPR001471AP2/ERF domain
PRINTSPR003672.5E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPEPRLLQLS NQKSFGKKSK SRPEDLKMSR KIRVICNDPD ATDSSSSEDE GEIQTKPLKL  60
KRIVREIHLP PFPFHPSKSM DVTTSTPSSS QDSNNGGKNQ ELKKKRVLAK TLSTRRSASQ  120
YRGVRQRKWG KWAAEIRDPF KGARIWLGTY NTAEEASQAY ESKRLEFESA LAAAPKSSNN  180
IVITSSSSSS EENEEESDSV VSQTSPAAAI LEMETSSSVL IKEDEEEMID TNLINELQVP  240
DLGFVDEGME INLGLPELDP FFMDDIGQFL DDFSAMDDIQ IYGFDDDVPS CLPDCDFDDF  300
GNDDISCWVD EALNVPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-15120161244ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140859.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A0A0K8800.0A0A0A0K880_CUCSA; Uncharacterized protein
STRINGXP_004140859.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-40ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]