PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.363830.1
Common NameCsa_6G055940, LOC101213348
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 405aa    MW: 43368.4 Da    PI: 6.8673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.363830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20212261255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Cucsa.363830.1 212 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 261
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-36212275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-33212270IPR001471AP2/ERF domain
PROSITE profilePS5103225.712212269IPR001471AP2/ERF domain
PfamPF008473.5E-14212261IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22212270IPR016177DNA-binding domain
PRINTSPR003671.1E-11213224IPR001471AP2/ERF domain
CDDcd000188.61E-15220271No hitNo description
PRINTSPR003671.1E-11235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MCSLKVANRR GIGSDLAQFP SGGAGDGDGD TGGGGGGGSS SSDDPHRLLY GQRDDGDYYS  60
AVGEVSTIVS TLTNVMSGQA APDWGYGRGQ GFPRGFVSSS SSSSSSTTSA SGSSGSELSY  120
VPGMSSYWVG QKRMREEEIS VQTQHDFHSA SRGFSFIRGF DHHFSQPQSS IPPVKEEVPP  180
PPHTAVSNPA ATFAASSMTS NDAVVIGERR RRYRGVRQRP WGKWAAEIRD PHKAARVWLG  240
TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVRLIHPPQH IPAAAAPQIA PQQTATFQSQ  300
NYRDYIEYSN LLQNPGDILG QPSSLLQQMF YNAHLPPFES SSSPAPAPSM SSVSNSVLFT  360
PTLQQQQMGI FRQPPQNQNQ GGSDYFPATS WDDSGGQYPS SSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22211272163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141007.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0A0KBA40.0A0A0A0KBA4_CUCSA; Uncharacterized protein
STRINGXP_004165890.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-16ethylene response factor 110
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]