PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.341800.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 353aa    MW: 39667 Da    PI: 8.9466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.341800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1546.8e-48141721128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................................kvkaeekewyfFs 62 
                     lppGfrF Ptdeel+v+yL++kv+g++++l ++i ++d+yk++Pw Lp+                                 k+  +ekewyfFs
  Cucsa.341800.1  14 LPPGFRFYPTDEELLVQYLCRKVAGHNFSL-QIIGDIDLYKFDPWVLPStysekyyiiailffvnlkfvnyliffylfgfagKAMFGEKEWYFFS 107
                     79***************************9.89***************5589******************9999999998775556999****** PP

             NAM  63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +rd+ky++g+r+nr++ sgyWkatg+dk + + +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Cucsa.341800.1 108 PRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-QGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 172
                     **************************999988.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-181063IPR003441NAC domain
PROSITE profilePS5100556.63214195IPR003441NAC domain
PfamPF023651.6E-2515172IPR003441NAC domain
SuperFamilySSF1019416.93E-4293195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGVAEKDPLS ELSLPPGFRF YPTDEELLVQ YLCRKVAGHN FSLQIIGDID LYKFDPWVLP  60
STYSEKYYII AILFFVNLKF VNYLIFFYLF GFAGKAMFGE KEWYFFSPRD RKYPNGSRPN  120
RVAGSGYWKA TGTDKIISTQ GKKVGIKKAL VFYVGKAPKG TKTNWIMHEY RLIDTSRKTG  180
STKLDDWVLC RIYKKNSSAQ KLPRMTSSIS SMECSNGGSS STCSSSHLDD VLESLPEIKD  240
GFFRLPRVNS LLTLQQDHEN LKFQNHLMGS TNFEWASTAA ATSFEGYNSV AELAPLAQSQ  300
APSGLISSDM YIPAGQPPRS TVEQEVQSGF QRFHNFGWLQ QNLSNSGDGF GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10312014171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10312014171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10312014171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10312014171NO APICAL MERISTEM PROTEIN
3swm_A1e-10312017174NAC domain-containing protein 19
3swm_B1e-10312017174NAC domain-containing protein 19
3swm_C1e-10312017174NAC domain-containing protein 19
3swm_D1e-10312017174NAC domain-containing protein 19
3swp_A1e-10312017174NAC domain-containing protein 19
3swp_B1e-10312017174NAC domain-containing protein 19
3swp_C1e-10312017174NAC domain-containing protein 19
3swp_D1e-10312017174NAC domain-containing protein 19
4dul_A1e-10312014171NAC domain-containing protein 19
4dul_B1e-10312014171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652388.10.0PREDICTED: NAC domain-containing protein 72-like isoform X1
SwissprotA0A3Q7HH641e-119JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A0A0LDN60.0A0A0A0LDN6_CUCSA; Uncharacterized protein
STRINGXP_004147806.10.0(Cucumis sativus)
STRINGXP_004154821.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.31e-122NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]