PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.321290.1

Common Name

Csa_3G017200, LOC101205985

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 540aa MW: 59973.1 Da PI: 6.9326

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.321290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.8	4.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Cucsa.321290.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	6.2E-10	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.04E-11	5	45	No hit	No description
CDD	cd00202	3.03E-16	6	51	No hit	No description
PROSITE profile	PS50114	11.345	7	40	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.9E-14	7	41	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.9E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF13919	7.8E-10	285	367	IPR028020	ASX homology domain
Pfam	PF16550	8.8E-9	300	366	IPR032368	UCH-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEFEDK 60 RISRWKNLSM CKNKEVKLLK RKQYQDNGLV VGVLPDHAQS FHKVVDEDTS NRSSSGSAIS 120 NSESCAQFGG ADASDLTGPS QSTAWEAMVP SRKRTCVGRP KSTAVEKLTK DLYTILREQQ 180 SYFSGSSEED LLFENETPMV SVEIGHGSVL MRHPSSIARE EESEASSISV DNKQFSLNEV 240 HSESSILPVH YETQNKFVNF STLGIGRKHS TGQGFLNDQI KRDRPQSERM QALGNRNSPL 300 CNIDLTDILN FREFTKQLTS ENQQELMKYL PSVDSEELPD SLNSMFESPQ FKENLNSFKQ 360 LLTEGVFDFS FPGAKREDCK ILSRLVLLDL SKSKWVERYN LLKKCSSGES VQGFAAASSS 420 LTNGKRVLDG QNKKLSETRT TMKSPKRVMT KTSTESKELV DSDGSCFSPR SLFALPSDGG 480 SFTLEALHFD EDSSDQDLLL DVRSNSSFPQ AELLHPALSF VAQPASNSSS SVNLRLMHR*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEFEDK  60
RISRWKNLSM CKNKEVKLLK RKQYQDNGLV VGVLPDHAQS FHKVVDEDTS NRSSSGSAIS  120
NSESCAQFGG ADASDLTGPS QSTAWEAMVP SRKRTCVGRP KSTAVEKLTK DLYTILREQQ  180
SYFSGSSEED LLFENETPMV SVEIGHGSVL MRHPSSIARE EESEASSISV DNKQFSLNEV  240
HSESSILPVH YETQNKFVNF STLGIGRKHS TGQGFLNDQI KRDRPQSERM QALGNRNSPL  300
CNIDLTDILN FREFTKQLTS ENQQELMKYL PSVDSEELPD SLNSMFESPQ FKENLNSFKQ  360
LLTEGVFDFS FPGAKREDCK ILSRLVLLDL SKSKWVERYN LLKKCSSGES VQGFAAASSS  420
LTNGKRVLDG QNKKLSETRT TMKSPKRVMT KTSTESKELV DSDGSCFSPR SLFALPSDGG  480
SFTLEALHFD EDSSDQDLLL DVRSNSSFPQ AELLHPALSF VAQPASNSSS SVNLRLMHR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147235.1	0.0	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-155	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A0A0L6R4	0.0	A0A0A0L6R4_CUCSA; Uncharacterized protein
STRING	XP_004163679.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4424	31	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-153	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Cucsa.321290.1
Entrez Gene	101205985

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]