![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.303990.2 | ||||||||
Common Name | Csa_5G148790, LOC101209208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 692aa MW: 77024.4 Da PI: 6.3945 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.5e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++ Cucsa.303990.2 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmTLATP-TQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGDN 220 99**************************999744433.458************************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ Cucsa.303990.2 221 GELRVGVRRR 230 999*****97 PP | |||||||
2 | Auxin_resp | 99 | 6.7e-33 | 255 | 333 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g d++p +WpnS WrsL Cucsa.303990.2 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAVDISP-HWPNSSWRSL 333 689***************6..89*********************************************999.*********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-38 | 120 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-39 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-20 | 127 | 229 | No hit | No description |
Pfam | PF02362 | 7.7E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.337 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-30 | 255 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.9E-6 | 567 | 616 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.88E-14 | 575 | 656 | No hit | No description |
PROSITE profile | PS51745 | 25.001 | 580 | 661 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.4E-6 | 625 | 658 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 692 aa Download sequence Send to blast |
MTYNGGDSYR QSCVSAQGCG RDDLYMELWR ACAGPLVDIP RVDERVFYFP QGHMEQLEAS 60 TNLELNKRIP LFNLDSKILC RVIHIEPLAD HESDEVYAQI TLMPESNQNE PKSMDPCPPE 120 PPRPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TLATPTQDLV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GELRVGVRRR ARQQSSMPPS 240 VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS 300 FEGEDSPERR FSGTIIGAVD ISPHWPNSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS 360 AVTGLSQPIS KNKRPRQPTP AHDGADLTKP THWDSGLAQS HDGKQCSNAA EGRKGENNES 420 CHHRETDTIS NSSCVSRTQT DTWLSPTQSN SYKHPVNDMA QDSKTVPSSG WTFLLGTPTS 480 HLVKLSDDQI LDPIESGKKG ETVASCRLFG IDLNHLAAEK ASSQPSSGSS DTDGRISTLS 540 VAQSDPKSDN LEVSIERKSE LSQASLKEIQ CNQSSSANTR SRTKVLMHGM AVGRAVDLTI 600 LEGYDQLIDE LEKMFDVRGQ LCARDKWEIV YTDDEGDMML VGDDPWEEFR NMVRRIFICS 660 KEQVKNMSSG SKQLTSIEVE GDVVTPVSPA V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 18 | 359 | 13 | 357 | Auxin response factor 1 |
4ldw_A | 1e-163 | 18 | 359 | 13 | 357 | Auxin response factor 1 |
4ldw_B | 1e-163 | 18 | 359 | 13 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU323416 | 0.0 | KU323416.1 UNVERIFIED: Trichosanthes dioica clone TdARF_14 auxin response factor 9-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654692.1 | 0.0 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0A0KKD5 | 0.0 | A0A0A0KKD5_CUCSA; Auxin response factor | ||||
STRING | XP_008437407.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.303990.2 |
Entrez Gene | 101209208 |
Publications ? help Back to Top | |||
---|---|---|---|
|