PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.303840.1
Common NameCsa_5G150420, LOC101209624
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 305aa    MW: 33639.7 Da    PI: 8.4411
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.303840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-18107156356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p +   r r++lg+++++e Aa a++ a+ kl+ge
  Cucsa.303840.1 107 YRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSPETAAYAYDCAACKLRGE 156
                     9******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.00E-21105165No hitNo description
PfamPF008475.9E-13106156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-30106164IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22106163IPR016177DNA-binding domain
PROSITE profilePS5103222.234106163IPR001471AP2/ERF domain
SMARTSM003803.8E-35106169IPR001471AP2/ERF domain
PRINTSPR003671.1E-11107118IPR001471AP2/ERF domain
PRINTSPR003671.1E-11145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNTMINTPNL QFGLTDVSTA LSNLILTGGG NTLDSILSHY ENLSSVTDSR DFQPAAGSSV  60
YLQQREVLQK FSQDRKSNGS RDLFSRAYEL LYSRSGAAVN GGERKIYRGV RQRHWGKWVA  120
EIRLPQNRMR VWLGTYDSPE TAAYAYDCAA CKLRGEYARL NFPNLKDLKT DLSSGEFARL  180
SELKKMVDAK IQAIFQKIRK GKGKRSVKKK DSQGTGGDLD SISGSCSSSS SSVSLPPATA  240
ELTEEWSWGN VQPLATAEEG LWNFENSHRA VSMDCATTGP ETECYSLSKM PSFDADLIWQ  300
VLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-16105163160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143870.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
TrEMBLA0A0A0KMF60.0A0A0A0KMF6_CUCSA; Uncharacterized protein
STRINGXP_004161458.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-50ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]