PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.280560.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25368 Da    PI: 9.0735
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.280560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-1964118256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q + Lee F+ n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Cucsa.280560.1  64 RKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSK 118
                     788899***********************************************98 PP
2HD-ZIP_I/II113.99.8e-3764153191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q++lLEesF+ +++L+p++K+ la eL+l+prqv+vWFqnrRAR k+kq+E ++e++kr++ +l+e+n+rL+ e eeLr ++
  Cucsa.280560.1  64 RKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQWELEELR-AI 153
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-1845121IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1951121IPR009057Homeodomain-like
PROSITE profilePS5007117.03860120IPR001356Homeobox domain
SMARTSM003891.5E-1562124IPR001356Homeobox domain
CDDcd000862.66E-1463121No hitNo description
PfamPF000461.6E-1664118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PfamPF021831.3E-7120153IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-18120163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
VTTPEYEKLI QSPLFPSQCY VVRELDMNRV PAEGEAEEDW ARGPSVEEGE EESSINNNGG  60
TQPRKKLRLS KDQSRLLEES FRLNHTLNPK QKEGLAMELK LKPRQVEVWF QNRRARSKLK  120
QTELECEYMK RCFGSLTEQN RRLQWELEEL RAIKVAPPAV VSRHNRHPPL LMRSTITICP  180
RCERIISSKN TVADQTATTA TAMPSKVVLS ALQLRQPSQA C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-110LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-110LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655468.11e-131PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX17e-71HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH387e-71HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A0A0KPM61e-144A0A0A0KPM6_CUCSA; Uncharacterized protein
STRINGXP_004150676.11e-131(Cucumis sativus)
STRINGXP_004161991.11e-131(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-54homeobox-leucine zipper protein 17