PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.251020.1
Common NameCsa_3G180265, LOC101217355
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 193aa    MW: 20276.5 Da    PI: 6.9579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.251020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.7e-161865355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++G+r  +++g+Wv+eIr+p+    + +r++lg++ t+e+Aa+a++ a++ l+g
  Cucsa.251020.1 18 FRGIR--SRSGKWVSEIREPR----KaTRIWLGTYPTPEMAAAAYDVAALTLKG 65
                    79995..678*********94....36***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-261774IPR001471AP2/ERF domain
SMARTSM003806.4E-291779IPR001471AP2/ERF domain
PROSITE profilePS5103219.7831773IPR001471AP2/ERF domain
CDDcd000183.16E-181775No hitNo description
PRINTSPR003671.8E-61829IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-181875IPR016177DNA-binding domain
PfamPF008477.1E-91965IPR001471AP2/ERF domain
PRINTSPR003671.8E-65575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSDNNNNSPL PPGRHRIFRG IRSRSGKWVS EIREPRKATR IWLGTYPTPE MAAAAYDVAA  60
LTLKGPNASL NFPHSLLSYP IPPSTSPSDI RAAAAIAAAA RNPQASPATT STATTTDSSG  120
TEAIDGGGPS SHATGDCSGK FVDEEELLNM PNLLVDMAKG MLVSPPRMKS PSSDDNSPNH  180
SQGDDGLWSY SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1415761275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140856.11e-138PREDICTED: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ905e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A0L6E01e-137A0A0A0L6E0_CUCSA; Uncharacterized protein
STRINGXP_004140856.11e-137(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-42ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]