PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.250290.1
Common NameCsa_2G297760
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 247aa    MW: 26735 Da    PI: 6.1383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.250290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20107157256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+W+AeIrd +     r  r++lg+f+tae Aa+a+++a+++++g+
  Cucsa.250290.1 107 RYRGVRQRP-WGKWAAEIRDpF-----RaVRVWLGTFDTAEAAAEAYDEAALRFRGN 157
                     7********.**********66.....68*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.37107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32107165IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22107165IPR016177DNA-binding domain
PfamPF008478.2E-14107156IPR001471AP2/ERF domain
SMARTSM003804.8E-35107170IPR001471AP2/ERF domain
PRINTSPR003671.6E-11108119IPR001471AP2/ERF domain
CDDcd000181.34E-15115166No hitNo description
PRINTSPR003671.6E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
EEETSVIVST LTQVVVGDQV SPSGGNGGAG VGRTLSTGSS SSSYSNSHKR GRQQDLVDDQ  60
QHSLLSSVSD ASHYSAAFND GRNVVGIYEY ERETRRNRGG EEEGRRRYRG VRQRPWGKWA  120
AEIRDPFRAV RVWLGTFDTA EAAAEAYDEA ALRFRGNKAK LNFPENVRLR PSPAPITPNN  180
QYANVSVSPA INLYDQMSLT SSMTSPPSTT AGLVSPSSWS GGHGGDGGFS LPQWTPEFND  240
QYSSPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22106167466ATERF1
3gcc_A6e-22106167466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650161.11e-116PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0A0LJY91e-178A0A0A0LJY9_CUCSA; Uncharacterized protein
STRINGXP_008457918.13e-98(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2457533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-23ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]