PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.237150.1
Common NameCsa_5G649890, LOC101207243
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 166aa    MW: 18428.5 Da    PI: 7.8487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.237150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-181565155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++ a+  ++g
  Cucsa.237150.1 15 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDVAAYHFRG 65
                    67*****999.**********8...557**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-231574IPR016177DNA-binding domain
PfamPF008477.7E-121565IPR001471AP2/ERF domain
CDDcd000185.20E-331575No hitNo description
PROSITE profilePS5103224.0261673IPR001471AP2/ERF domain
SMARTSM003801.2E-391679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-321674IPR001471AP2/ERF domain
PRINTSPR003673.3E-101728IPR001471AP2/ERF domain
PRINTSPR003673.3E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGEPSSMRSH GAATSSYRGV RKRKWGKWVS EIREPGKKTR IWLGSFETPE MAATAYDVAA  60
YHFRGRDARL NFPHLVNSLP FPLSSTPDDI RLAAHEAALR VRTTPVVASS DDQLGDETST  120
LGLAPVTVRL SPSQIQAINE STLDSPKMWM QMSSESLLMD QEFSNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-191278168ATERF1
3gcc_A7e-191278168ATERF1
5wx9_A1e-18877676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141635.11e-118PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-58ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0A0KXW91e-117A0A0A0KXW9_CUCSA; Uncharacterized protein
STRINGXP_004141635.11e-118(Cucumis sativus)
STRINGXP_004156249.11e-118(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-61ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]