PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.235510.1
Common NameCsa_1G364460, LOC101219745
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 252aa    MW: 27575.4 Da    PI: 5.1417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.235510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1755105155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Cucsa.235510.1  55 PVFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 105
                     579****998.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-1255105IPR001471AP2/ERF domain
PROSITE profilePS5103222.65556113IPR001471AP2/ERF domain
SMARTSM003801.0E-3556119IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2156114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-3156114IPR001471AP2/ERF domain
PRINTSPR003679.5E-105768IPR001471AP2/ERF domain
CDDcd000181.29E-3057115No hitNo description
PRINTSPR003679.5E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENDSTILNS SPPPSPSSSG SLSPPSSSSA VVESNRKRLK RPRENNNNNN NSKHPVFRGV  60
RMRAWGKWVS EIREPRKKSR IWLGTFSTPE MAARAHDVAA LTIKGTSAIL NFPELAHQFP  120
RPASTSPRDV QAAAAKAASM EIPTPPLSSS SSSTSTSSSS SSSSSSSLCP SSPEELTEIV  180
ELPSLGTSYE TAELGNEFVF VDSVEGWLYS YPWYNRVSNA EQVEELQEDY GLFFKDQILM  240
ADYTDTFLWQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1851114973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818110.0LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462760.11e-129PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-66DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3CI751e-128A0A1S3CI75_CUCME; ethylene-responsive transcription factor TINY-like
STRINGXP_008462760.11e-129(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]