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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.235510.1 | ||||||||
Common Name | Csa_1G364460, LOC101219745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 27575.4 Da PI: 5.1417 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Cucsa.235510.1 55 PVFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 105 579****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.3E-12 | 55 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 56 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 56 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 56 | 114 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 56 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-10 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.29E-30 | 57 | 115 | No hit | No description |
PRINTS | PR00367 | 9.5E-10 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MENDSTILNS SPPPSPSSSG SLSPPSSSSA VVESNRKRLK RPRENNNNNN NSKHPVFRGV 60 RMRAWGKWVS EIREPRKKSR IWLGTFSTPE MAARAHDVAA LTIKGTSAIL NFPELAHQFP 120 RPASTSPRDV QAAAAKAASM EIPTPPLSSS SSSTSTSSSS SSSSSSSLCP SSPEELTEIV 180 ELPSLGTSYE TAELGNEFVF VDSVEGWLYS YPWYNRVSNA EQVEELQEDY GLFFKDQILM 240 ADYTDTFLWQ N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 51 | 114 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681811 | 0.0 | LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462760.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 2e-66 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1S3CI75 | 1e-128 | A0A1S3CI75_CUCME; ethylene-responsive transcription factor TINY-like | ||||
STRING | XP_008462760.1 | 1e-129 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-65 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.235510.1 |
Entrez Gene | 101219745 |
Publications ? help Back to Top | |||
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