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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.183410.3 | ||||||||
Common Name | Csa_5G077780, LOC101204612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 676aa MW: 75050.4 Da PI: 6.3484 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71 | 1.6e-22 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + Cucsa.183410.3 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218 99****************************964333..4459************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r Cucsa.183410.3 219 NGELRVGVRR 228 999*****97 PP | |||||||
2 | Auxin_resp | 94 | 2.5e-31 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d + W nS+WrsLk Cucsa.183410.3 254 ASHAISTGTLFSVFYKPR---STFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLK 333 789***************...79**********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-43 | 117 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-40 | 124 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.97E-21 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 2.8E-20 | 128 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-29 | 254 | 333 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 29.276 | 550 | 643 | IPR000270 | PB1 domain |
Pfam | PF02309 | 6.5E-6 | 551 | 586 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.81E-12 | 552 | 627 | No hit | No description |
Pfam | PF02309 | 1.1E-6 | 597 | 640 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MSFSAASNLP SGGPHSGLSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM 60 HQGLEQQMPS FNLPSKILCK VVNVVLRAES DTDEVYAQIT LLPESNQNEV TSPDPPLPEP 120 TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNQWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATASHAIST GTLFSVFYKP RSTFLVSLNK YLEAQNHKLS VGMRFKMRFE 300 GEEVPERSFS GTIVGLGDNA SPGWANSEWR SLKVQWDEPS SILRPDKVSA WELEPLVASN 360 PLSTQPTQRN KRPRPTVLPS SSPDATVLGG WKPTVESSTF SYAEPQRGRD LYSSPKFSTA 420 ASNSLGFNAN SSLGAVSSNN YWCNTNRVEN IMDPSSHGAN REPVEKKQNS RNGCRLFGIQ 480 LLGNSNVDEA SPVSTPKMGG EDRLVPPIDT DFEQHSEPSN IHRSDIPSIS CDADKSCLIS 540 PLESQSRQIR SCTKVHMQGI AVGRAVDLTR FNQYDDLLRK LEEMFDIEGE LCGSLKKWQV 600 VYTDDEDDMM LVGDDPWNEF CSMVRKIFIY TTEEVKRLSP KIKLPLGGEA KLSKPDSDII 660 ANHTEDQSSI VGSDC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 356 | 2 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 356 | 2 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 356 | 2 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 370 | 374 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323414 | 0.0 | KU323414.1 UNVERIFIED: Trichosanthes dioica clone TdARF_12 auxin response factor 1-like mRNA, partial sequence. | |||
GenBank | KU323427 | 0.0 | KU323427.1 UNVERIFIED: Trichosanthes dioica clone TdARF_35 auxin response factor 1-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654515.1 | 0.0 | PREDICTED: auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A0A0KJ00 | 0.0 | A0A0A0KJ00_CUCSA; Auxin response factor | ||||
STRING | XP_004142338.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.183410.3 |
Entrez Gene | 101204612 |