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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.173460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 142aa MW: 15847.5 Da PI: 10.8896 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.4 | 4.6e-12 | 6 | 53 | 48 | 99 |
EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Cucsa.173460.1 6 FVV--TGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 53 455..8999***************************..8899999****997 PP | |||||||
2 | Auxin_resp | 77.9 | 2.6e-26 | 78 | 137 | 1 | 59 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59 aahaa+t+s F+v+YnPras+seFv+++ k++ka+ ++vsvGmRf+m fete+ss rr+ Cucsa.173460.1 78 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRY 137 79********************************86599*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.151 | 1 | 54 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-9 | 6 | 53 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 8 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-14 | 10 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 1.7E-21 | 78 | 137 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
NMAYLFVVTG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM 60 PSSVLSSDSM HIGLLAAAAH AAATNSCFTV FYNPRASPSE FVIPLTKYVK AVFHTRVSVG 120 MRFRMLFETE ESSVRRYCNF K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-54 | 7 | 137 | 213 | 343 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323407 | 0.0 | KU323407.1 UNVERIFIED: Trichosanthes dioica clone TdARF_5 auxin response factor 8-like mRNA, partial sequence. | |||
GenBank | KU323421 | 0.0 | KU323421.1 UNVERIFIED: Trichosanthes dioica clone TdARF_29 auxin response factor 8-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182562.1 | 2e-79 | auxin response factor 8, partial | ||||
Swissprot | Q0J951 | 9e-75 | ARFL_ORYSJ; Auxin response factor 12 | ||||
Swissprot | Q258Y5 | 9e-75 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A438BWE3 | 1e-81 | A0A438BWE3_VITVI; Auxin response factor | ||||
STRING | VIT_04s0079g00200.t01 | 6e-77 | (Vitis vinifera) | ||||
STRING | XP_008463127.1 | 7e-77 | (Cucumis melo) | ||||
STRING | XP_008381532.1 | 4e-79 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19164 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 4e-74 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.173460.1 |
Publications ? help Back to Top | |||
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