PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.161510.1
Common NameCsa_2G376790, LOC101210422
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 374aa    MW: 42108.3 Da    PI: 9.2887
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.161510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.67e-55481751128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+deel+++yL +k+++ +++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++
  Cucsa.161510.1  48 LPPGFRFHPSDEELITFYLLNKISDANFTG-RAITDVDLNKFEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 141
                     79*************************999.89***************99999****************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++el+g+kktLvfykgrap+gekt+Wvmheyrl
  Cucsa.161510.1 142 nTSELIGMKKTLVFYKGRAPRGEKTNWVMHEYRL 175
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-6446196IPR003441NAC domain
PROSITE profilePS5100561.09748196IPR003441NAC domain
PfamPF023653.9E-2849175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTEKEDGKIR SEVKKKNTMT TESDRHRRHP QDNQTQDQEH QQDKDQTLPP GFRFHPSDEE  60
LITFYLLNKI SDANFTGRAI TDVDLNKFEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT  120
NRATNTGYWK TTGKDKEIFN SNTSELIGMK KTLVFYKGRA PRGEKTNWVM HEYRLHSKTA  180
FRTAKDEWVV CRVFQKSPGA KKYPPNQSRA VNPYVNLEIP SSLLPPPIMQ LGDPSATQYG  240
YGRNYITSTE LAELNRVLRT GGSGGSNGGS TQGINLSMQP QFNYPNTGGC FTISGLNLNL  300
GGGISQPVLR QVPPPPVATT MTIGQDIASS MMASTITPET AYGAEINNNA SGHSNRFMNM  360
DHCMDLENYW PTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-564720216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-564720216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-564720216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-564720216171NO APICAL MERISTEM PROTEIN
3swm_A2e-564720219174NAC domain-containing protein 19
3swm_B2e-564720219174NAC domain-containing protein 19
3swm_C2e-564720219174NAC domain-containing protein 19
3swm_D2e-564720219174NAC domain-containing protein 19
3swp_A2e-564720219174NAC domain-containing protein 19
3swp_B2e-564720219174NAC domain-containing protein 19
3swp_C2e-564720219174NAC domain-containing protein 19
3swp_D2e-564720219174NAC domain-containing protein 19
4dul_A2e-564720216171NAC domain-containing protein 19
4dul_B2e-564720216171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138783.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBLA0A0A0LS520.0A0A0A0LS52_CUCSA; Uncharacterized protein
STRINGXP_004138783.10.0(Cucumis sativus)
STRINGXP_004160780.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-97NAC domain containing protein 38
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]