PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.156880.1
Common NameCsa_1G000050
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LFY
Protein Properties Length: 387aa    MW: 43432 Da    PI: 6.3649
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.156880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY631.61.3e-19213731385
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 
                     mdpe++sa+lfkw+pr+++   +   l  a +++     +    +  l +le+lf+ayG+ry+t+akiaelGftvstLvdmkdeel+d+m+sls+
  Cucsa.156880.1   1 MDPETLSATLFKWEPREMVGGGSGAPL-PAPLPP----YSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELEDMMNSLSH 90 
                     9***************99855443332.232223....33556677799********************************************** PP

         FLO_LFY  96 ifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkka 188
                     ifr+dllvGeryGikaavraerrrl++e ++++rr+lls+d++t  +ldalsqeglseepvq+ekea+gsgg+g g++e+v+a+e      +kk+
  Cucsa.156880.1  91 IFRWDLLVGERYGIKAAVRAERRRLDDEIESSRRRHLLSNDTTTnvVLDALSQEGLSEEPVQQEKEAVGSGGGG-GAWEAVVAAEM-----RKKQ 179
                     ****************************99********9999887799**********************9999.89999988732.....3333 PP

         FLO_LFY 189 skkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtn 283
                        ++++ +kk+++ + +ed++e+e   +e+++ + +erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtn
  Cucsa.156880.1 180 ---RRRNGSKKKQVIAMEEDNDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTN 271
                     ...2333333333455677888888888889999999********************************************************** PP

         FLO_LFY 284 qvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLC 378
                     qvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalr  fkergenvGawrqacykplv+ia +qgwdida+fnahprL+iWYvPtkLrqLC
  Cucsa.156880.1 272 QVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVTIAGTQGWDIDAIFNAHPRLAIWYVPTKLRQLC 366
                     *********************************************************************************************** PP

         FLO_LFY 379 hlerska 385
                     h+er+ +
  Cucsa.156880.1 367 HAERNGS 373
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.1E-1971372IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDPETLSATL FKWEPREMVG GGSGAPLPAP LPPYSLRPRE LGLGGLEDLF QAYGIRYYTA  60
AKIAELGFTV STLVDMKDEE LEDMMNSLSH IFRWDLLVGE RYGIKAAVRA ERRRLDDEIE  120
SSRRRHLLSN DTTTNVVLDA LSQEGLSEEP VQQEKEAVGS GGGGGAWEAV VAAEMRKKQR  180
RRNGSKKKQV IAMEEDNDEN EGAGDEEENM EVSERQREHP FIVTEPGEVA RGKKNGLDYL  240
FHLYEQCREF LIQVQNIAKE RGEKCPTKVT NQVFRYAKKA GASYINKPKM RHYVHCYALH  300
CLDEEASNAL RSVFKERGEN VGAWRQACYK PLVTIAGTQG WDIDAIFNAH PRLAIWYVPT  360
KLRQLCHAER NGSTASTSTA SAHLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1082133713161PROTEIN LEAFY
2vy2_A1e-1082133713161PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181RKKQRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0593200.0AF059320.1 Cucumis sativus transcription activator LFY-like protein (CFL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138016.10.0PREDICTED: floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A0A0LNE70.0A0A0A0LNE7_CUCSA; Uncharacterized protein
STRINGXP_004167195.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-108floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]