PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.147760.1
Common NameCsa_7G047400, LOC101205560
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 395aa    MW: 44379.5 Da    PI: 6.2553
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.147760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19196246256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Cucsa.147760.1 196 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 246
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-34195254No hitNo description
SMARTSM003801.4E-37196259IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-23196255IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-32196254IPR001471AP2/ERF domain
PROSITE profilePS5103222.998196253IPR001471AP2/ERF domain
PfamPF008472.2E-12197246IPR001471AP2/ERF domain
PRINTSPR003676.4E-11197208IPR001471AP2/ERF domain
PRINTSPR003676.4E-11219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
DKKTGKLKMV IDANTPDKKI EKGKHVAAVS LERQQWKPVL DDAFLSRRPL KKICSSDFHN  60
PFLHSPLSLS PPSSKIQFPF DFEASQHSSI TTTTTTTQFN SQHPISSSSS SSSPFTAFGS  120
PEQQMISFSS NQQQGFGFPP YFLNGDPVAS QQRLFKYWSD AFHLSPRGRA MMMSRFGPDG  180
GNLFRPPLQP ISATKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE DAAMAYDREA  240
FKLRGENARL NFPDRFFKKD IPKTEAETEH TIPITEEAHP ENFILLPPPE EEKPNNDLTE  300
SGSCASEPTE MVWGEMEEAW FNAIPAGWGP GSAVWDNLDP TNNLVLQSQI PFGSSNEQQM  360
NESNDNQNKL ETSESASSSS TSAPTKLFLW KDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21195255162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136820.10.0PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A0A0K1S40.0A0A0A0K1S4_CUCSA; Uncharacterized protein
STRINGXP_004168511.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-56ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]