PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.137650.3
Common NameCsa_6G405890
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 606aa    MW: 66714.1 Da    PI: 7.1152
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.137650.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-23118219199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        ++    +t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  Cucsa.137650.3 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVEP--PVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RAE 208
                     89****************************974333..3459************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+++v+r+
  Cucsa.137650.3 209 TGDLCIGVRRA 219
                     9999****996 PP
2Auxin_resp103.13.5e-34277360183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa  a++++ Fe+vY+P a+t+eFvvk++++++a+++++   mRfkm fetedss++++ +Gtv++++++dp+rWp+S+Wr+L+
  Cucsa.137650.3 277 AAMLAASGQSFEIVYYPCAGTPEFVVKASSLRSAMQIHWYSAMRFKMPFETEDSSRISWfMGTVSSIQAADPIRWPDSPWRMLQ 360
                     5778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-30107220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-35110221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-20117218No hitNo description
SMARTSM010196.0E-21118220IPR003340B3 DNA binding domain
PfamPF023625.9E-21118219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661118220IPR003340B3 DNA binding domain
PfamPF065074.1E-29277360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDSVIDPMMN HDKHLDSQLW HACAGGLIQL PTINSKVVYF PQGHTEHAQG NVDFGNARIP  60
SIIPCRVSGI RHMADPETDE VFAKIKLSPL ANNEFNLDNE DDLLIHNELK SQDKPTSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VEPPVQTILA KDVHGEIWKF RHIYRGTPRR  180
HLLTTGWSSF VNQKKLVAGD SIVFLRAETG DLCIGVRRAK RGIGCGIDYS PGWNPTNSGS  240
SLVGYSDYMR ESEGRLGRRN SNGNLSGRVK VESVIEAAML AASGQSFEIV YYPCAGTPEF  300
VVKASSLRSA MQIHWYSAMR FKMPFETEDS SRISWFMGTV SSIQAADPIR WPDSPWRMLQ  360
VTWDEPDLLQ NVKSVNPWLV EVVVNMPAIH VSPFSPPRKK PRFPLQADSS GFGHLPMPSF  420
STNIFDTTNP LQGITANKIP AGIQGARHTQ FGLSSPNLQI SKLLPGQFSP GLKHLDDATP  480
LPGIRGEDIF AGMKNPDNCS LWLPMRNHIQ SSKESSKESS KESSKESKET KPAHIILFGQ  540
LIFPNQQNSN SCSGDTMNAS DANQEKASNL SDGSGLSSQQ NGSLENSSEG GSTLYNGRMK  600
NYIEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-741538151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8433440.0KC843344.1 Cucumis sativus auxin response factor 10c (ARF10c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268716.10.0auxin response factor 18-like
RefseqXP_011656294.10.0PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_011656295.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0A0KHG70.0A0A0A0KHG7_CUCSA; Auxin response factor
STRINGXP_004149906.10.0(Cucumis sativus)
STRINGXP_004158594.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]