PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.129630.1
Common NameCsa_5G165850, LOC101221583
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 253aa    MW: 27423.2 Da    PI: 8.3209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.129630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19133183255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Cucsa.129630.1 133 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAYRMRG 183
                     8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-32132191IPR001471AP2/ERF domain
CDDcd000182.22E-32132191No hitNo description
SuperFamilySSF541713.27E-23133193IPR016177DNA-binding domain
PfamPF008476.9E-14133183IPR001471AP2/ERF domain
SMARTSM003804.8E-39133197IPR001471AP2/ERF domain
PROSITE profilePS5103224.184133191IPR001471AP2/ERF domain
PRINTSPR003671.0E-10134145IPR001471AP2/ERF domain
PRINTSPR003671.0E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MYHTTKSESD FCFLDPIRRH LLGESDISAA AAAAAPLGRP TPVFTRSGSF SSLIPCLEDN  60
WGDLPLKVDD SEDMMLAAVL RDAVGVGWVP SLGSCDFGFS EVKSEPEVIP LSFPAVLPNV  120
TMKPTVVPEK GKHYRGVRQR PWGKFAAEIR DPAKNGARVW LGTYETAEDA ALAYDRAAYR  180
MRGSRALLNF PLRVNSGEPE PVRVTSKRSS PEVSSSPKRR KKVGSAVESV GVQVEQQVAS  240
FTHGGQLFVS QC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-43130198270ATERF1
3gcc_A4e-43130198270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222PKRRKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152388.10.0PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotQ9LW504e-79ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A0A0KKS00.0A0A0A0KKS0_CUCSA; AP2/ERF domain-containing transcription factor
STRINGXP_004152388.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-64ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]