PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.118970.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 291aa    MW: 33695.7 Da    PI: 4.1154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.118970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1981131256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r r +lg+f+tae+Aa a+++ + kl+ge
  Cucsa.118970.1  81 LYRGVRQRH-WGKWVAEIRLPRN---RNRLWLGTFDTAEDAALAYDREAFKLRGE 131
                     59******9.**********965...48*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-3380140No hitNo description
SMARTSM003801.2E-3981144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3281139IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2381139IPR016177DNA-binding domain
PROSITE profilePS5103222.89381138IPR001471AP2/ERF domain
PRINTSPR003679.8E-118293IPR001471AP2/ERF domain
PfamPF008472.5E-1282131IPR001471AP2/ERF domain
PRINTSPR003679.8E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVHQPPSLLP HHNQFVAPPL ASTQNGFGYP PYFMGEFASF QQQQQKQQQH HQFLQYWNES  60
LDLNSKAGFR PQVRPLNATK LYRGVRQRHW GKWVAEIRLP RNRNRLWLGT FDTAEDAALA  120
YDREAFKLRG ENARLNFPEL FLNKDKEAEE EEEEASQASA PQQDVDNNNH DNDIELESNN  180
EGVTEENRQE EEEEEEEEEE EEEEEEEEEG ISKTQEMVWR EMAEAWLNAM PAGWGPGSPV  240
WDDLDTTNNL LLQPQLQFVN PIQQQSFDLT SASPSSSSCP MKPFFLKDED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2180138160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819180.0LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448413.11e-149PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9SKT17e-49ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A1S3BJM01e-148A0A1S3BJM0_CUCME; ethylene-responsive transcription factor ERF054-like
STRINGXP_004140031.11e-150(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]