PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.107350.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 278aa    MW: 30015.8 Da    PI: 8.4081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.107350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-1791135250
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+
  Cucsa.107350.1  91 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAA 135
                     59******9.**********954...5********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-1490120No hitNo description
PROSITE profilePS5103218.9491135IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1791137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-2491136IPR001471AP2/ERF domain
SMARTSM003807.4E-2391158IPR001471AP2/ERF domain
PfamPF008471.6E-1192135IPR001471AP2/ERF domain
PRINTSPR003673.2E-1092103IPR001471AP2/ERF domain
PRINTSPR003673.2E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
FTDIRTLLSN LLLSPHSTNT LDSIFSHCLP SSAAPPTESP LGSSVYLRQR DLVHQFCLEN  60
RDACSSANLH LHPLGISTGY GGFPTAVKKK LYRGVRQRHW GKWVAEIRLP QNRMRVWLGT  120
YDTAEAAAYA YDRAATLEIW DFADCGRLNA LKNSVDAKIQ AICLKMKKEK AKKNSKKSDP  180
KNGAVSESCS MSSSSPAVEE WCRSGEMGCS SVVSEDGFWR SENSPPASSS SSGSAESSAA  240
VAAEAVVGEG VCEGYSSLAK MPSFRSRFDL GSSCKLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1490135147ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-1488135250ATERF1
3gcc_A5e-1488135250ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149763.11e-135PREDICTED: ethylene-responsive transcription factor ERF061-like
TrEMBLA0A1S3BTG41e-108A0A1S3BTG4_CUCME; ethylene-responsive transcription factor ERF061
STRINGXP_004149763.11e-135(Cucumis sativus)
STRINGXP_004167088.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-34ERF family protein