PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.104510.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 455aa    MW: 50530.8 Da    PI: 6.3456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.104510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79e-21261310255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Cucsa.104510.1 261 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDQAAYKLRG 310
                     59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-33260320No hitNo description
PROSITE profilePS5103223.09261318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32261319IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-23261319IPR016177DNA-binding domain
SMARTSM003804.4E-37261324IPR001471AP2/ERF domain
PRINTSPR003675.2E-11262273IPR001471AP2/ERF domain
PfamPF008471.6E-14262310IPR001471AP2/ERF domain
PRINTSPR003675.2E-11284300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MRSLSHKTGG SFVRETAIFG LIYTLSNLPL FSSPDFILRS YTQNRDYYFL SSFSFFLLCN  60
YSLLFNFFHF PPFSDFPVSL SSLSVIILCL CNFSILHFLL FYTQKAASLN SVIDVYGGTS  120
TPVYYSDPFS EELMKALQPF MKSAISTSSS FSPSSSPSPP HPSVSSQPRL IPDFCSPSST  180
RLFSQGFSGI EQMGFEQSGP IGLNNPTPSQ ILQIQAQIQL PSPTMSSFSS SSSFQSQYHN  240
FLTPKSFPMK HMGSPPKPNK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA  300
YDQAAYKLRG DFARLNFPHL KHQFGDFKPL HPSVDAKLQS ICQSLKQGKT EVCSVEDEKP  360
TTIPLPSESN SAVNNFCELE LKSEVETSSS SSSSSPSRSE DYSTSTGSSP DSSISFLDFS  420
DSQWGEGVEA FCLEKFPSIE IDWAALSQLA ESEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22260318160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22260318463ATERF1
3gcc_A7e-22260318463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143476.10.0PREDICTED: ethylene-responsive transcription factor ERF056
TrEMBLA0A0A0KGT30.0A0A0A0KGT3_CUCSA; AP2/ERF domain-containing transcription factor
STRINGXP_004143476.10.0(Cucumis sativus)
STRINGXP_004160135.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.18e-46ERF family protein