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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.078800.4 | ||||||||
Common Name | Csa_7G329330, LOC101205805 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 685aa MW: 77009 Da PI: 6.089 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.4e-24 | 125 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++ +k+a+e+ +++++ +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++ Cucsa.078800.4 125 FCKILTASDTSTHGGFSVLRKHATEClppldMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNG 217 99****************************9555555669************************************************..34899 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ Cucsa.078800.4 218 ELRVGVRRQ 226 99****996 PP | |||||||
2 | Auxin_resp | 101 | 1.6e-33 | 251 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+++++k+++++k+ + vGmRfkm+fe+e+s+err++Gt+vgv d++p +W++SkWrsLk Cucsa.078800.4 251 ASHAVRTQTYFVVYYKPRT--SQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSP-QWSDSKWRSLK 330 689***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.23E-40 | 116 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-40 | 118 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-19 | 123 | 225 | No hit | No description |
PROSITE profile | PS50863 | 12.252 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-22 | 125 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-22 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.3E-31 | 251 | 330 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-5 | 564 | 610 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.62E-11 | 569 | 650 | No hit | No description |
PROSITE profile | PS51745 | 25.774 | 574 | 666 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.1E-5 | 616 | 658 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MTLYEENPGE SRKGLEGEDL YEELWKACAG PLVEVPVDGE RVFYFPQGHM EQLEESTNQE 60 LNHQIPHFDL PPKILCRVVN IRLLAEKETD EVYAQITLYP EADQSEPQSA DPEPPERTRQ 120 TVHSFCKILT ASDTSTHGGF SVLRKHATEC LPPLDMSQST PTQELAAKDL HGYEWKFKHI 180 FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRQARQQ SLMPSSVISS 240 HSMHLGVLAT ASHAVRTQTY FVVYYKPRTS QFIISLNKYL ETVKNGYEVG MRFKMRFEGE 300 ESPERRFTGT IVGVGDMSPQ WSDSKWRSLK IQWDEPATIQ RPERVSPWEI EPFVPSASLN 360 FTHPAIKSKR ARPVEIPPPG FWLQGSTISH EISQLSGTNE VQSSNNRVVW ALGQRKLDSN 420 SSHCNPVANV EGIWPSPPLN ISLNLYPDST FERELVQQKH PLSSPYSSSV TSKPSSDLIQ 480 PDQLEKGSKP DISLGCRIFG IDLKNNCSIV PTLERRSSCL MMVTDGAKEP VVTAVVTPQV 540 DAGNLSQPSK EQQLSTELLT KGTQTKHISN LSSRTRTKVQ MQGVAVGRAV DLTTLEGYED 600 LIDELENVFE IKGELRGINK WSIVFTDDEN DMMLVGDDPW PEFCKMVKRI FICSSEEVKK 660 MSRESKIVSP SSLDSLDSER KTES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-172 | 14 | 353 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-172 | 14 | 353 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-172 | 14 | 353 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 1e-172 | 14 | 353 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-172 | 14 | 353 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU323411 | 0.0 | KU323411.1 UNVERIFIED: Trichosanthes dioica clone TdARF_9 auxin response factor 18-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011659155.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X2 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A0A0K887 | 0.0 | A0A0A0K887_CUCSA; Auxin response factor | ||||
STRING | XP_004139643.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.078800.4 |
Entrez Gene | 101205805 |
Publications ? help Back to Top | |||
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