PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.078000.2
Common NameCsa_7G352440, LOC101210954
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 232aa    MW: 26473 Da    PI: 10.3642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.078000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.6e-12109149350
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                      +GV++  k+ +W A I++      +k+++lg+fg+ eeAa ++++a+
  Cucsa.078000.2 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTFGSQEEAAHLYDRAA 149
                     79**98..47*********4.....5********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.12491163IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-10107153IPR016177DNA-binding domain
SMARTSM003801.0E-4108165IPR001471AP2/ERF domain
PfamPF008475.9E-7109150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-8110153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKSSFV APLPKFSDHE TATENPSPSN ILITLHPKSS DDVNIKDRSS  60
IVNMESSFRN ALEWTSLNEQ SNQPISGHPL KHRKRHRRKN SHNQELSIMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTFGSQEE AAHLYDRAAF VCGREPNFEL SEEEKQELQK FKWEDFLAMT  180
RHAITNKKHK RLSVSAGSSP KKLGASSLQI DNTELKHRFN EAPLPEDINF T*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818026e-90LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBankLN7132556e-90LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149780.11e-172PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_011659197.11e-172PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-44ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0A0K8E31e-171A0A0A0K8E3_CUCSA; Uncharacterized protein
STRINGXP_004149780.11e-172(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-37ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]