![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.071070.1 | ||||||||
Common Name | Csa_2G068680, LOC101205542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 1108aa MW: 121882 Da PI: 6.5462 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.5e-23 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ Cucsa.071070.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 225 99*****************************9445444.38************************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ Cucsa.071070.1 226 QQLLLGIRRA 235 889****997 PP | |||||||
2 | Auxin_resp | 119.5 | 2.7e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+ Cucsa.071070.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 343 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-43 | 123 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-41 | 125 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-19 | 133 | 225 | No hit | No description |
SMART | SM01019 | 7.7E-23 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.083 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-21 | 134 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-34 | 260 | 343 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.6E-7 | 993 | 1080 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.557 | 995 | 1080 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.5E-7 | 1012 | 1074 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009638 | Biological Process | phototropism | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1108 aa Download sequence Send to blast |
MKTPANGAAG AAAAPNSNEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV 60 AASLRKDVDG QVPNYPSLAS KLLCLLHNVT LHADPETDEV YAQMTLLPVP SFDKDALLRS 120 DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVAKDLH 180 DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSV 360 WEIEPVIAPF FICPPPFLRS KRPRQPGMPD DDSSDLDGIF KRTMFGDDFC MKDPQGYPGL 420 NLVQWMNMQN PSLSNSMQQN YMHSFSGSML PNLGSVDISR QLGLSNAQLP QSNNIQFNAQ 480 RLLSQAQQLD QLPKLPTSMN SLGSVVQPPQ QLDDMSQQTR QNLINQNAVS SQIQAQIMQQ 540 PHTNGILQQQ TALQNQQLQR NAPQNLQMQQ HQQILSQNQQ QNMNPSPHLE QLNHQLQMSD 600 NQVHIQMLQK FQQQPQSLLA QQSALQPSQL VQLPDQQRQS VDASQSFSRS MSSNQMLDIP 660 QSTPAAGPPS NALPQQAANC NGQTNNRFSN QHLQPKLPQL QQPASSTVLS DMSRPMGLPP 720 AQINNQLSAA TSSLITGVAG AGQSGITDDI PSCSTSPSTN NCSSLVQPVA NGRVHRTTGL 780 VEDVAQSTAT IFSSNTLDNM SPNANLVHKD LPQKTAVKPS LNISKNQSHG IFAQQTFLSG 840 VVAQTDFLDT SSSTTSACLS QNDAQLQQNN MMSFNSQPML FKDNSQDLEV PTDLHNIPYG 900 NHVDGQMVAQ LSSDPLLDKG IGGLGKDFSN NFSSGAMLTT YDAQKDPQQE ISSSIVSQSF 960 GIPDMTFNSM DSTINDNTFL NRNQWAPPPP FQRMRTYTKV YKRGAVGRSI DIARYSGYDE 1020 LKQDLARRFG IEGQLEDRQK IGWKLVYVDH ENDVLLVGDD PWDDFVNCVR SIKILSPQEV 1080 QQMSLDGDIG NGVLPNQACS SSDGGNA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 18 | 364 | 42 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB112672 | 0.0 | AB112672.1 Cucumis sativus CsARF2 mRNA for auxin response factor 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011648969.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A0A0LGX6 | 0.0 | A0A0A0LGX6_CUCSA; Auxin response factor | ||||
STRING | XP_004168159.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6823 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.071070.1 |
Entrez Gene | 101205542 |
Publications ? help Back to Top | |||
---|---|---|---|
|