PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.055920.1
Common NameCsa_6G361330, LOC101205513
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 214aa    MW: 24259.2 Da    PI: 4.6536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.055920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-201464155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr++k +g+WvAeIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Cucsa.055920.1 14 TKYRGVRRRK-WGKWVAEIRLPNS---RDRIWLGSYDSPEKAARAFDAALFCLRG 64
                    69*****998.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.49E-311474No hitNo description
PfamPF008472.9E-131464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-291573IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-211573IPR016177DNA-binding domain
PROSITE profilePS5103222.6291572IPR001471AP2/ERF domain
SMARTSM003803.7E-341578IPR001471AP2/ERF domain
PRINTSPR003672.1E-91627IPR001471AP2/ERF domain
PRINTSPR003672.1E-93854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNNNISQTSA AGDTKYRGVR RRKWGKWVAE IRLPNSRDRI WLGSYDSPEK AARAFDAALF  60
CLRGPHAKFN FPDQPLPDIL NAHSLTAHQI QEFAAKFANE YECHQNDDVV DVAPPPTTTT  120
AEEKCGISPS SSNYNNMDWS FLDEIHDHHY PNPNPHSSSS SSNFFPLYND HFDNILTNDF  180
YQSSTTNNND DLYDAVSGDD DDTFSNQPFL WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1515721472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6824780.0LN682478.1 Cucumis melo genomic scaffold, unanchored_scaffold00619.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144279.11e-158PREDICTED: ethylene-responsive transcription factor ERF017
TrEMBLA0A0A0KIJ31e-157A0A0A0KIJ3_CUCSA; Uncharacterized protein
STRINGXP_004172714.11e-158(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-43ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]