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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.047990.1 | ||||||||
Common Name | Csa_6G524670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 916aa MW: 101699 Da PI: 6.6098 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.3e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ Cucsa.047990.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ Cucsa.047990.1 218 KNQLLLGIRRA 228 9999****997 PP | |||||||
2 | Auxin_resp | 119.3 | 3.1e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k Cucsa.047990.1 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.46E-22 | 126 | 227 | No hit | No description |
SMART | SM01019 | 1.4E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-34 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 7.19E-7 | 773 | 856 | No hit | No description |
PROSITE profile | PS51745 | 24.219 | 781 | 865 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence Send to blast |
MRLSTAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAISTNRE 60 VDAHIPSYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLTAQEQKEP YLPAELGAPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDSTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPTG FPSFHGLKED DLGLNSQLMW LRGDGLDRGI QPLNFPGIGV 420 APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQT QNLPNRPANF 480 MPPQMLQQPQ PQPQPPQTFL QGDENQHLSH SQAQSQPTAV LQQEIKHQTF NNHPQQQQQQ 540 QQQQQQQQQP QQQVFDHHQI PSPMSTMSQF SSASQSQAQS LQTIPPLCRQ QSFSDSNPNH 600 VTSPIISPLH SLLGGSFSQD ESSQMLNLPR TNPMIHSSTW PSKRAAIDPL LSSGNSQFVL 660 SQGENIGTTP ANISQNAFSL PPFPGRECSL DQGNVDPQSN LLFGVNIEPS SLLMQNGMPN 720 LRGICSDSDS TAIPFSSNYV NTAGTNFSAN PTGTGTPSNC NEDSGFLQSP ENTGQVNPPT 780 RTFVKVYKSG SFGRSLDISK FSSYHQLRSE LAHMFGLEGE LEDPLRSGWQ LVFVDRENDV 840 LLLGDDPWPE FVNSVWCIKI LSPQEVQDMG KRGLELLNSV PIQRLSNGSC DNYANRQESS 900 RNMNSGITSV GSLEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 15 | 357 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB112673 | 0.0 | AB112673.1 Cucumis sativus CsARF3 mRNA for auxin response factor 3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292624.1 | 0.0 | auxin response factor 6 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0A0KI77 | 0.0 | A0A0A0KI77_CUCSA; Auxin response factor | ||||
STRING | XP_004166469.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.047990.1 |
Publications ? help Back to Top | |||
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