PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.043420.1
Common NameCsa_6G505270, LOC101204760
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 373aa    MW: 42850.6 Da    PI: 5.0136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.043420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-5591381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv +yL+kkv+++k++l +vik++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v
  Cucsa.043420.1   9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKDIDLYRIEPWDLQEkcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATLAGFWKATGRDKAV 102
                     69****************************.9***************953543344677************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ k++l+g++ktLvfy+grap+g+ktdW+mheyrle
  Cucsa.043420.1 103 YD-KNKLIGMRKTLVFYRGRAPNGQKTDWIMHEYRLE 138
                     **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-613158IPR003441NAC domain
PROSITE profilePS5100559.3519158IPR003441NAC domain
PfamPF023651.5E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MESIESSCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IKDIDLYRIE PWDLQEKCWI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATLA GFWKATGRDK AVYDKNKLIG MRKTLVFYRG  120
RAPNGQKTDW IMHEYRLESD ENNPPQEEGW VVCRAFKKRT TGQSKTSVVE RWDSSYFYDE  180
PSGVCSAIDP LELISRQALS PHGLLEHNNI MCKQEMEQTE NVKFIQYNDS FVQLPQLESP  240
SLPLVKRSSS ISLVSECNEE EDPPAKRRYN NNNNNNINSK VTDWRALDKF VASQLSQGDA  300
FEGEGNSRFG AQSSNNNNNT NNNIIISNNN INSADMAILL MQNRGDQDEE NLYKGFLSSN  360
SESDFGICIF EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-50916317170NO APICAL MERISTEM PROTEIN
1ut4_B4e-50916317170NO APICAL MERISTEM PROTEIN
1ut7_A4e-50916317170NO APICAL MERISTEM PROTEIN
1ut7_B4e-50916317170NO APICAL MERISTEM PROTEIN
3swm_A5e-50916320173NAC domain-containing protein 19
3swm_B5e-50916320173NAC domain-containing protein 19
3swm_C5e-50916320173NAC domain-containing protein 19
3swm_D5e-50916320173NAC domain-containing protein 19
3swp_A5e-50916320173NAC domain-containing protein 19
3swp_B5e-50916320173NAC domain-containing protein 19
3swp_C5e-50916320173NAC domain-containing protein 19
3swp_D5e-50916320173NAC domain-containing protein 19
3ulx_A4e-50915915169Stress-induced transcription factor NAC1
4dul_A4e-50916317170NAC domain-containing protein 19
4dul_B4e-50916317170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658038.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_011658039.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9SL411e-152NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0A0KH690.0A0A0A0KH69_CUCSA; Uncharacterized protein
STRINGXP_004158876.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-128vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  6. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]